SVHunter is a long-read-based structural variation detection through transformer model. SVHunter can detect and genotype DEL/INS/DUP/INV/TRA.
☆16Mar 31, 2025Updated last year
Alternatives and similar repositories for SVHunter
Users that are interested in SVHunter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆20Mar 13, 2026Updated 4 months ago
- Pangenome-based structural variation caller☆28Jan 20, 2026Updated 6 months ago
- Regenotyping structural variants through an accurate and efficient force-calling method☆26Apr 17, 2026Updated 3 months ago
- Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.☆16May 14, 2026Updated 2 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆68May 26, 2026Updated last month
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 3 years ago
- ☆40Jan 14, 2026Updated 6 months ago
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated last year
- Python bindings to spoa☆22Dec 3, 2025Updated 7 months ago
- Characterization of Structural Variation in Chinese samples☆17Dec 22, 2021Updated 4 years ago
- CAncer Standards Long-read Evaluation☆62Jun 26, 2026Updated 3 weeks ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆36Aug 18, 2025Updated 11 months ago
- A tool for somatic structural variant calling using long reads☆174Jun 8, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Somatic structural variant caller for long-read data☆92Jun 30, 2026Updated 3 weeks ago
- ☆15Dec 11, 2022Updated 3 years ago
- Jasmine: SV Merging Across Samples☆256Dec 20, 2024Updated last year
- A phase-aware pharmacogenomic diplotyper for PacBio datasets☆22Jun 22, 2026Updated 3 weeks ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Uses cDBG to count unitigs in bacterial populations☆18Feb 15, 2023Updated 3 years ago
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated 4 months ago
- A Tool for low Coverage HiFi Data Assembly☆43Dec 27, 2025Updated 6 months ago
- Bash script for promoter sequences extraction☆16Aug 7, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Nov 6, 2025Updated 8 months ago
- ☆52Sep 4, 2025Updated 10 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆82Updated this week
- Structural variant toolkit for VCFs☆420May 22, 2026Updated last month
- Phylogenetic, Distance and Other Calculations on VCF and Fasta Files☆31Apr 30, 2026Updated 2 months ago
- ☆17Jan 5, 2021Updated 5 years ago
- Long read based human genomic structural variation detection with cuteSV☆290Jul 12, 2026Updated last week
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆107Jun 25, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆36Oct 27, 2025Updated 8 months ago
- A list of software for pangenomics☆196Jul 14, 2026Updated last week
- A complete diploid human genome☆153Jun 23, 2026Updated 3 weeks ago
- ☆129Updated this week
- diploid SNV caller for error-prone reads☆212Apr 26, 2024Updated 2 years ago
- Methods to determine sequence element (unitig) presence/absence☆26Mar 6, 2026Updated 4 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆52Feb 3, 2021Updated 5 years ago