Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.
☆13Feb 15, 2026Updated last month
Alternatives and similar repositories for SomaSV
Users that are interested in SomaSV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆62Mar 12, 2026Updated last month
- Regenotyping structural variants through an accurate and efficient force-calling method☆26Nov 28, 2025Updated 4 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆36Oct 27, 2025Updated 5 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- A Tool for low Coverage HiFi Data Assembly☆41Dec 27, 2025Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆35Mar 24, 2026Updated 3 weeks ago
- ☆15Dec 11, 2022Updated 3 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 11 months ago
- ☆51Sep 4, 2025Updated 7 months ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- 10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/☆13Jul 27, 2025Updated 8 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Mar 29, 2023Updated 3 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- A fully featured MinKNOW simulator for testing read until experiments.☆25Apr 28, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for somatic structural variant calling using long reads☆168Updated this week
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆50Mar 26, 2026Updated 2 weeks ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆72Updated this week
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Python bindings to spoa☆22Dec 3, 2025Updated 4 months ago
- Plots how you spend your days from Moves data☆24Jun 17, 2013Updated 12 years ago
- A 'time'-like utility for Unix that measures peak memory usage☆69Sep 4, 2012Updated 13 years ago
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆52Dec 9, 2025Updated 4 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A VCF comparison engine for structual variant benchmarking☆23Sep 26, 2025Updated 6 months ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- ultrafast structural variation detection from circular consensus sequencing reads☆13Mar 8, 2022Updated 4 years ago
- Somatic structural variant caller for long-read data☆91Mar 3, 2026Updated last month
- Functions to compare a SV call sets against a truth set.☆30Jun 18, 2025Updated 9 months ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆14Apr 9, 2022Updated 4 years ago
- This repository contains the reference genome assembly Ash1, built from data collected from an Ashkenazi individual.☆12Feb 2, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- All kinds of NGS analysis pipeline☆12Oct 10, 2019Updated 6 years ago
- A complete diploid human genome☆145Mar 27, 2026Updated 2 weeks ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated last year
- Python wrapper for wavefront alignment using WFA2-lib☆38Nov 19, 2024Updated last year
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 3 months ago
- Color Genomics Structural Variant Simulator☆11Sep 6, 2022Updated 3 years ago
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 6 months ago