Bash script for promoter sequences extraction
☆16Aug 7, 2018Updated 7 years ago
Alternatives and similar repositories for extract_promoters
Users that are interested in extract_promoters are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Mar 12, 2026Updated 4 months ago
- Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced cou…☆12Dec 7, 2022Updated 3 years ago
- This repository contains the source code for the tappAS application. See README for details.☆22Jun 23, 2026Updated 3 weeks ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Oct 26, 2021Updated 4 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Uses cDBG to count unitigs in bacterial populations☆18Feb 15, 2023Updated 3 years ago
- MetaFX – library for feature extraction from whole-genome metagenome sequencing data☆17Feb 24, 2026Updated 4 months ago
- List of tools that help create documents, diagrams and another things about software architecture (free or partial free)☆27Apr 30, 2026Updated 2 months ago
- SVHunter is a long-read-based structural variation detection through transformer model. SVHunter can detect and genotype DEL/INS/DUP/INV/…☆16Mar 31, 2025Updated last year
- A Xojo/python tool for identification and annotation of transcription factor binding sites in bacterial genomes☆19Jul 8, 2026Updated last week
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated last week
- Methods to determine sequence element (unitig) presence/absence☆26Mar 6, 2026Updated 4 months ago
- HMmer Based UndeRstandinG of gene clustERs☆15Feb 6, 2026Updated 5 months ago
- BioThings Explorer: a schema-based client for API interoperability☆14Aug 18, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Create NNN primers tiling codons of a gene for codon mutagenesis☆14Jan 13, 2021Updated 5 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 4 months ago
- Statistical power studies for multi-omics experiments.☆34Jan 18, 2025Updated last year
- ☆11May 3, 2017Updated 9 years ago
- Trinotate annotation report summaries in R☆13Feb 24, 2016Updated 10 years ago
- Promoter activity measurement and modeling; artificial promoter design and testing☆13Mar 24, 2023Updated 3 years ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆24Dec 6, 2018Updated 7 years ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)☆17Sep 19, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Unified API for Searching and Crawling☆34Mar 10, 2025Updated last year
- ☆12Feb 27, 2019Updated 7 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆17Jun 13, 2023Updated 3 years ago
- Combining de novo and reference-guided assembly with Scaffold_builder☆20May 30, 2026Updated last month
- ☆14Dec 16, 2021Updated 4 years ago
- ☆22Aug 20, 2024Updated last year
- A Microbiology-based Rogue-Like Game written in Lua via Love2D☆12Jul 24, 2021Updated 4 years ago
- R package for microbial pangenomics☆25Apr 12, 2022Updated 4 years ago
- Solutions to Rosalind Bioinformatics Problems☆14Nov 9, 2014Updated 11 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆20Sep 5, 2023Updated 2 years ago
- ☆17Nov 19, 2025Updated 8 months ago
- RetroPath2.0 to pathways☆18Jan 28, 2026Updated 5 months ago
- Metabolite Atlas Main Repository☆16Updated this week
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆51Mar 12, 2026Updated 4 months ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago