Bash script for promoter sequences extraction
☆16Aug 7, 2018Updated 8 years ago
Alternatives and similar repositories for extract_promoters
Users that are interested in extract_promoters are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Mar 12, 2026Updated 6 months ago
- Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced cou…☆12Dec 7, 2022Updated 3 years ago
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- This repository contains the source code for the tappAS application. See README for details.☆22Jun 23, 2026Updated 2 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Oct 26, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆21Feb 15, 2025Updated last year
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- MetaFX – library for feature extraction from whole-genome metagenome sequencing data☆17Feb 24, 2026Updated 6 months ago
- Uses cDBG to count unitigs in bacterial populations☆19Feb 15, 2023Updated 3 years ago
- List of tools that help create documents, diagrams and another things about software architecture (free or partial free)☆27Apr 30, 2026Updated 4 months ago
- A Xojo/python tool for identification and annotation of transcription factor binding sites in bacterial genomes☆19Aug 8, 2026Updated last month
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 months ago
- SVHunter is a long-read-based structural variation detection through transformer model. SVHunter can detect and genotype DEL/INS/DUP/INV/…☆16Mar 31, 2025Updated last year
- Methods to determine sequence element (unitig) presence/absence☆28Mar 6, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- HMmer Based UndeRstandinG of gene clustERs☆15Feb 6, 2026Updated 7 months ago
- BioThings Explorer: a schema-based client for API interoperability☆14Aug 18, 2022Updated 4 years ago
- Create NNN primers tiling codons of a gene for codon mutagenesis☆14Jan 13, 2021Updated 5 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 6 months ago
- Statistical power studies for multi-omics experiments.☆35Jan 18, 2025Updated last year
- ☆11May 3, 2017Updated 9 years ago
- Trinotate annotation report summaries in R☆13Feb 24, 2016Updated 10 years ago
- Promoter activity measurement and modeling; artificial promoter design and testing☆13Mar 24, 2023Updated 3 years ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆24Dec 6, 2018Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆110Dec 11, 2023Updated 2 years ago
- Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)☆17Sep 19, 2024Updated 2 years ago
- Unified API for Searching and Crawling☆35Mar 10, 2025Updated last year
- ☆12Feb 27, 2019Updated 7 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆17Jun 13, 2023Updated 3 years ago
- ☆15Dec 16, 2021Updated 4 years ago
- Combining de novo and reference-guided assembly with Scaffold_builder☆20May 30, 2026Updated 3 months ago
- ☆23Aug 20, 2024Updated 2 years ago
- A Microbiology-based Rogue-Like Game written in Lua via Love2D☆12Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for microbial pangenomics☆25Apr 12, 2022Updated 4 years ago
- Solutions to Rosalind Bioinformatics Problems☆14Nov 9, 2014Updated 11 years ago
- ☆20Sep 5, 2023Updated 3 years ago
- ☆17Nov 19, 2025Updated 10 months ago
- Metabolite Atlas Main Repository☆16Sep 9, 2026Updated last week
- RetroPath2.0 to pathways☆18Jan 28, 2026Updated 7 months ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆51Mar 12, 2026Updated 6 months ago