Phylogenetic, Distance and Other Calculations on VCF and Fasta Files
☆31Apr 30, 2026Updated last week
Alternatives and similar repositories for fastreeR
Users that are interested in fastreeR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Moderator Templates for https://www.biostars.org/☆11Apr 15, 2021Updated 5 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Mar 1, 2019Updated 7 years ago
- SV genotyper for long reads with a variation graph☆16Apr 15, 2026Updated 3 weeks ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 6 years ago
- Nextflow Alignment Pipeline - from fastq.gz to sorted bam/cram with ease☆21Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆14Jun 30, 2021Updated 4 years ago
- This is the webpage of the ESGEM-AMR Working Group☆16Apr 29, 2026Updated last week
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆16Jul 26, 2017Updated 8 years ago
- A ggplot2 layer for drawing brackets annotated with p-values and significance testing between barplot samples.☆11May 25, 2017Updated 8 years ago
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆17Mar 18, 2025Updated last year
- R package that makes linux environment modules available from R☆11Jan 13, 2023Updated 3 years ago
- Template for building your own portfolio☆27Jul 2, 2025Updated 10 months ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆44Apr 18, 2024Updated 2 years ago
- ☆13Nov 1, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Dec 8, 2025Updated 5 months ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.☆15May 1, 2026Updated last week
- Public data from the Glazy database☆13Feb 27, 2026Updated 2 months ago
- A Nextflow pipeline for evaluating assembly quality☆40Nov 9, 2025Updated 6 months ago
- Programs used in the lab for various tasks☆14Mar 5, 2023Updated 3 years ago
- Time-Weighted Dynamic Time Warping☆10Dec 26, 2023Updated 2 years ago
- 10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/☆13Jul 27, 2025Updated 9 months ago
- TOGA2: A faster, more versatile successor of Tool to infer Orthologs from Genome Alignments☆34Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- Gene Ontology (GO) enrichment analysis☆12Aug 7, 2023Updated 2 years ago
- A shiny application to visualize MCscan result☆37Mar 8, 2026Updated 2 months ago
- Single-cell generalized trendmodel (scGTM): a flexible and interpretable model for gene expression along cell pseudotime. This is a Pyt…☆12Sep 26, 2023Updated 2 years ago
- Bayesian Deep Ensembles via MILE: easy to use, scikit-learn compatible and fast (JAX powered)☆42Apr 1, 2026Updated last month
- ☆12Jun 12, 2023Updated 2 years ago
- GitKraken lesson (forked from HBS-RCS)☆10Mar 20, 2026Updated last month
- ☆11Feb 20, 2024Updated 2 years ago
- que paquete☆10Jul 17, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 3 years ago
- Complex structural variant visualization for HiFi sequencing data☆48Oct 24, 2025Updated 6 months ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- ☆16Apr 25, 2019Updated 7 years ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 4 years ago
- R-package: Calculation of haplotype blocks and libraries☆35Jul 22, 2025Updated 9 months ago