StatFunGen / xqtl-protocolLinks
Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
☆47Updated this week
Alternatives and similar repositories for xqtl-protocol
Users that are interested in xqtl-protocol are comparing it to the libraries listed below
Sorting:
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆53Updated last week
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆67Updated 6 months ago
- Fast, integrative fine mapping with functional data☆60Updated 6 years ago
- Sequence kernel association test (SKAT)☆52Updated 2 months ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated last year
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆41Updated 9 months ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆50Updated 7 months ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆85Updated 2 years ago
- Cross-population fine-mapping☆37Updated 10 months ago
- Quality control steps for GWAS☆24Updated 2 years ago
- ☆50Updated this week
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆70Updated 11 months ago
- ☆63Updated 3 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆33Updated 3 months ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆68Updated 11 months ago
- ☆26Updated 5 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 6 months ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆55Updated 4 months ago
- Software for estimating correlation of trait effect sizes across populations☆49Updated 4 months ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆73Updated 3 months ago
- Make LocusZoom-like plots with your own LD matrix.☆45Updated 3 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 6 months ago
- Colocalization analysis of genetic association signals☆54Updated 3 months ago
- Tutorial Website☆59Updated 4 years ago
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- Development for SAIGE and SAIGE-GENE(+)☆82Updated 3 weeks ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year