StatFunGen / xqtl-protocolLinks
Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
☆47Updated this week
Alternatives and similar repositories for xqtl-protocol
Users that are interested in xqtl-protocol are comparing it to the libraries listed below
Sorting:
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- ☆50Updated 3 weeks ago
- Fast, integrative fine mapping with functional data☆61Updated 6 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆56Updated 2 months ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆43Updated 11 months ago
- ☆63Updated 3 years ago
- Sequence kernel association test (SKAT)☆52Updated 4 months ago
- Quality control steps for GWAS☆25Updated 2 years ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆87Updated 2 years ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆71Updated this week
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆68Updated 8 months ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated last year
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆52Updated 9 months ago
- Cross-population fine-mapping☆40Updated last year
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆74Updated last month
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆12Updated 8 months ago
- Development for SAIGE and SAIGE-GENE(+)☆84Updated 3 weeks ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆35Updated 5 months ago
- Colocalization analysis of genetic association signals☆53Updated 5 months ago
- An accurate and efficient HLA imputation method.☆27Updated 2 years ago
- ☆27Updated 5 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Make LocusZoom-like plots with your own LD matrix.☆48Updated 3 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- An R package to time somatic mutations☆65Updated 4 years ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆62Updated last month
- Software for estimating correlation of trait effect sizes across populations☆50Updated 6 months ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆42Updated 2 years ago
- causal TWAS (cTWAS)☆47Updated last week
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago