alvesrco / pipecovLinks
This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the pathogen. The scientific community and governments of other countries are looking for actions along these lines. The United Kingdom recently established a research network for genomic studies of SARS-CoV-2Covid…
☆14Updated 2 years ago
Alternatives and similar repositories for pipecov
Users that are interested in pipecov are comparing it to the libraries listed below
Sorting:
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- Associated code for EvoWeaver publication☆15Updated 2 months ago
- Influenza genome analysis Nextflow workflow☆28Updated 3 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆59Updated 11 months ago
- collection of bioinformatic scripts☆31Updated last year
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago
- ☆26Updated 10 months ago
- MGnify genome analysis pipeline☆108Updated this week
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆141Updated last week
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- Machine-learning-based general bacterial promoter prediction tool.☆48Updated 2 years ago
- ☆35Updated 2 years ago
- Fast and flexible ORF finder☆73Updated 3 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 2 months ago
- From metagenomes to epitopes and beyond☆12Updated last month
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆27Updated 6 months ago
- Various bioinformatics tutorials☆61Updated last year
- NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design☆59Updated last month
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- a novel encoding method for viral identification in metagenomics☆15Updated last year
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- The NanoPipe pipeline analyzes reads generated by the Oxford Nanopore sequencing devices. As a result, it provides alignments to any targ…☆18Updated 6 years ago
- ☆35Updated last year
- A package to annotate protein sequences☆59Updated 4 months ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 3 years ago
- Applied Python Programming for Life Scientists☆25Updated 4 years ago
- ☆35Updated last month
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆34Updated 6 years ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago