dsarov / MGAP
An automated assembly pipeline for microbial genomes
☆16Updated 3 months ago
Alternatives and similar repositories for MGAP:
Users that are interested in MGAP are comparing it to the libraries listed below
- A gene-targeted assembler tool☆19Updated 7 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated 2 months ago
- MAG Circularization Method☆33Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- read cloud assembler☆34Updated 5 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- Improvement of metagenome-assembled genomes☆50Updated 4 years ago
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆48Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆23Updated 6 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆15Updated 5 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- IslandPath standalone software☆31Updated last year
- Strain Prediction and Analysis with Representative SEquence☆18Updated last month
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆18Updated 3 years ago
- ☆16Updated 4 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆23Updated last year
- frame-shift correction for long-read (meta)genomics☆32Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 2 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated 2 years ago
- Strain Resolution ON Graphs☆47Updated last year