Alternatives and similar repositories for NGS-Pipeline

Users that are interested in NGS-Pipeline are comparing it to the libraries listed below

• nanoporetech / dRNA-paper-scripts
  Direct RNA publication scripts
  ☆11Updated 8 years ago
• Kingsford-Group / rnaseqtools
  toolkit to process gtf files
  ☆17Updated 3 years ago
• galikbence / genome_annotation
  Pipeline for eukaryotic genome annotation based on external evidences
  ☆13Updated 2 years ago
• sndrtj / afplot
  Plot allele frequencies in VCF files
  ☆11Updated 6 years ago
• evodify / allele-specific-expression
  Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)
  ☆12Updated 5 months ago
• NYU-BFX / lncRNA-screen
  lncRNA-screen
  ☆25Updated 8 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 7 months ago
• naumenko-sa / bioscripts
  a bucket of bioinformatics scripts
  ☆13Updated last week
• Shicheng-Guo / HowtoBook
  Readme
  ☆10Updated 5 years ago
• mccoy-lab / t2t-variants
  Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".
  ☆17Updated 2 years ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆27Updated 6 months ago
• kaspermunch / PopulationGenomicsCourse
  Course in population genomics at BiRC
  ☆12Updated 6 months ago
• schmitzlab / Widespread-Long-range-Cis-Regulatory-Elements-in-the-Maize-Genome
  scripts used for processing and analyzing data in the article.
  ☆13Updated 6 years ago
• caasivfbioinfo / Bol_pangenome
  ☆16Updated last year
• ACAD-UofA / Guide-to-manipulating-PLINK-EIG-and-VCF-files
  A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…
  ☆23Updated 2 years ago
• eacooper400 / GWAS_Pipelines
  Instructions and helpful R code for Running GEMMA and GAPIT
  ☆13Updated 8 years ago
• ZhaoTingzju / GWAS_script
  Working on cotton resequencing
  ☆11Updated 5 years ago
• raymondkiu / bioinformatics-tools
  Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…
  ☆22Updated 3 weeks ago
• IBEXCluster / HPC-GVCW
  Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.
  ☆13Updated last year
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆52Updated 4 years ago
• wen-chen / GCEN
  GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation
  ☆21Updated 3 years ago
• RacconC / gtftools
  ☆16Updated 2 years ago
• mchaisso / blasr
  This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…
  ☆22Updated 6 years ago
• YinYuan-001 / muntjac_code
  ☆10Updated 4 years ago
• mattravenhall / SV-Pop
  Upscaling SV detection to a multi-population level.
  ☆22Updated 3 months ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 11 months ago
• yukaiquan / biotools
  I often use some of the self-written programs.
  ☆16Updated this week
• scottgigante / haplotyped-methylome
  Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation
  ☆23Updated 6 years ago
• asdcid / Chloroplast-genome-assembly
  A pipeline for assemble chroloplast genome using short/long reads
  ☆10Updated 3 years ago