Large scale Blast Score Ratio (BSR) analysis
☆36Nov 18, 2025Updated 6 months ago
Alternatives and similar repositories for LS-BSR
Users that are interested in LS-BSR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆122May 29, 2026Updated 2 weeks ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆176Apr 16, 2025Updated last year
- Assembling the cause of phenotypes and genotypes from NGS data☆29Jun 11, 2020Updated 6 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- An automated assembly pipeline for microbial genomes☆19Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆89Oct 27, 2023Updated 2 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- SPecies level IdentificatioN of metaGenOmic amplicons☆11Apr 11, 2018Updated 8 years ago
- This is the source code for ARGs-OAP v2.0 construction☆13Aug 1, 2019Updated 6 years ago
- Mapping-Assisted Targeted-Assembly for Metagenomics☆27Mar 28, 2025Updated last year
- Short Read Sequence Typing for Bacterial Pathogens☆149Jun 20, 2021Updated 4 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆102Jul 8, 2022Updated 3 years ago
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tools to analyze the differences and similarities between CRISPR arrays☆11Dec 17, 2024Updated last year
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆24May 8, 2024Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆44Jul 17, 2020Updated 5 years ago
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Jan 17, 2026Updated 4 months ago
- Get microbial sequence data easier and faster☆28Nov 7, 2019Updated 6 years ago
- Recombination-free trees☆70Apr 26, 2026Updated last month
- all methods related to Enterobase☆44Sep 4, 2024Updated last year
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆52Feb 2, 2021Updated 5 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆155Dec 31, 2025Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated 4 months ago
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated last year
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆19Mar 25, 2026Updated 2 months ago
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆13May 22, 2026Updated 3 weeks ago
- Calculate assocations between genes and traits☆31Mar 10, 2025Updated last year
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Jun 4, 2026Updated last week
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆14Nov 20, 2025Updated 6 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Feb 25, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 8 years ago
- ☆23May 8, 2023Updated 3 years ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 9 months ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Updated this week
- Cluster Investigation & Virus Epidemiology Tool☆50Jun 17, 2025Updated 11 months ago
- A tool for removing redundant genomes from a set of assemblies☆81May 6, 2026Updated last month