jasonsahl / LS-BSRLinks
Large scale Blast Score Ratio (BSR) analysis
☆38Updated 3 weeks ago
Alternatives and similar repositories for LS-BSR
Users that are interested in LS-BSR are comparing it to the libraries listed below
Sorting:
- Split Kmer Analysis☆65Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆60Updated 2 weeks ago
- Predict plasmids from uncorrected long read data☆41Updated last month
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆85Updated 11 months ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Estimate metagenomic coverage and sequence diversity☆57Updated this week
- de novo virus assembler of Illumina paired reads☆58Updated 4 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated last week
- Long read metagenomics practical at EBAME18☆18Updated 7 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Recombination-free trees☆62Updated 3 months ago
- ☆37Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated last month
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆48Updated 4 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 9 months ago
- all methods related to Enterobase☆43Updated last year
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- A toolbox for improving metagenome-assembled genomes.☆62Updated 4 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆75Updated 2 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆51Updated 3 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago