jpearl01 / mcsmrtLinks
Microbiome Classifier Pipeline for Pacific Biosciences 16s Data
☆11Updated last year
Alternatives and similar repositories for mcsmrt
Users that are interested in mcsmrt are comparing it to the libraries listed below
Sorting:
- A shiny package for microbiome functional enrichment analysis☆38Updated 2 weeks ago
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆17Updated 8 years ago
- ☆14Updated last week
- ☆24Updated 5 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- ☆42Updated 8 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- ☆23Updated 7 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 5 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last month
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 3 years ago
- ☆12Updated 4 years ago
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Updated 6 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- selbal: selection of balances for microbial signatures☆32Updated 10 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 5 months ago
- Microbiome research☆21Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Updated 6 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."☆21Updated 6 years ago
- Auto-parameterizing QC Pipeline for Illumina sequencing runs☆17Updated last year
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- ☆13Updated last year
- A microbiome analysis toolkit for R☆25Updated 2 years ago
- Scripts for stat and plot figures in rice microbiome paper☆30Updated last year