jpearl01 / mcsmrtLinks
Microbiome Classifier Pipeline for Pacific Biosciences 16s Data
☆11Updated last year
Alternatives and similar repositories for mcsmrt
Users that are interested in mcsmrt are comparing it to the libraries listed below
Sorting:
- ☆24Updated 5 years ago
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆17Updated 7 years ago
- ☆12Updated 3 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 4 months ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- ☆13Updated last month
- ☆20Updated 5 years ago
- Transform files to the microtable object with microeco package☆27Updated 3 weeks ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 4 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- ☆23Updated 7 years ago
- selbal: selection of balances for microbial signatures☆32Updated 6 months ago
- ☆41Updated 7 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes☆13Updated 8 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Updated 8 years ago
- scripts for microbiome analysis☆11Updated last year
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆47Updated this week
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Updated 6 years ago
- ☆15Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago