jpearl01 / mcsmrtLinks
Microbiome Classifier Pipeline for Pacific Biosciences 16s Data
☆11Updated last year
Alternatives and similar repositories for mcsmrt
Users that are interested in mcsmrt are comparing it to the libraries listed below
Sorting:
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆17Updated 8 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated last week
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- ☆12Updated 4 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- ☆24Updated 5 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- http://huttenhower.sph.harvard.edu/waafle☆22Updated 11 months ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- ☆23Updated 7 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 3 years ago
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago
- A microbiome analysis toolkit for R☆24Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated 11 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆41Updated last year
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- ☆41Updated 8 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 5 months ago
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Updated 6 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- Transform files to the microtable object with microeco package☆28Updated last month
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 5 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago