Microbiome Classifier Pipeline for Pacific Biosciences 16s Data
☆11Jan 22, 2024Updated 2 years ago
Alternatives and similar repositories for mcsmrt
Users that are interested in mcsmrt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 16S rRNA database☆13Nov 29, 2018Updated 7 years ago
- ☆18Apr 17, 2025Updated 11 months ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 2 years ago
- Deep neural network based prediction model for gene essentiality prediction in microbes☆10Feb 11, 2021Updated 5 years ago
- Repository with materials for the Speeding Up Science Workshops at UC Davis☆10Oct 31, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Variant Calling and Postfiltering☆11Jan 9, 2017Updated 9 years ago
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 3 years ago
- Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-☆34Sep 20, 2019Updated 6 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Jan 22, 2020Updated 6 years ago
- 解构R语言中的“黑魔法”☆17Jun 11, 2015Updated 10 years ago
- Tools to Configure Proxy Interactively☆16Oct 6, 2019Updated 6 years ago
- An automated assembly pipeline for microbial genomes☆19Jan 15, 2026Updated 2 months ago
- metaX: a flexible and comprehensive software for processing omics data.☆26Jun 16, 2023Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Feb 12, 2016Updated 10 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Editable DT tables as shiny inputs and passed as reactives☆12Feb 28, 2019Updated 7 years ago
- Provides a simplified method for bringing tidy data into R from KISTERS WISKI databases via KiWIS API.☆13Oct 11, 2024Updated last year
- R interface to GenBank/GenPept files☆14Jan 12, 2021Updated 5 years ago
- A model-based visualization method for microbiome data☆16Oct 27, 2025Updated 5 months ago
- ☆16Apr 26, 2019Updated 6 years ago
- ☆17Sep 20, 2019Updated 6 years ago
- Read nanopore sequence reads in real-time☆14Feb 9, 2017Updated 9 years ago
- 📊 An R package of RNA-seq workflow☆15May 4, 2022Updated 3 years ago
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆10Feb 23, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆36Dec 4, 2023Updated 2 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Nov 18, 2018Updated 7 years ago
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Jan 17, 2026Updated 2 months ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆12Mar 10, 2026Updated 2 weeks ago
- Protein-ligand binding sites prediction toolkits☆21Jan 2, 2019Updated 7 years ago
- How can we get email and text message alerts when sensors either fail or transmit abnormal reading? If we have a dashboard that is built …☆19May 30, 2023Updated 2 years ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- A nextflow pipeline for performing bacterial RNA-Seq data analysis.☆12Oct 14, 2025Updated 5 months ago
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆13Jul 28, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Filter fasta/fastq(.gz) files by ID and/or sequence length☆15Feb 8, 2020Updated 6 years ago
- A consistent interface to encrypt and decrypt strings, R objects, files☆23Feb 9, 2023Updated 3 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Feb 6, 2018Updated 8 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Feb 25, 2021Updated 5 years ago
- (formerly eelpond) an automated RNA-Seq workflow system☆27Oct 14, 2020Updated 5 years ago
- command line bioinformatic scripts written in R☆24Jun 5, 2022Updated 3 years ago