ncbi / TPMCalculatorLinks
TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
☆130Updated last year
Alternatives and similar repositories for TPMCalculator
Users that are interested in TPMCalculator are comparing it to the libraries listed below
Sorting:
- HMMRATAC peak caller for ATAC-seq data☆100Updated 7 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆171Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆114Updated 4 months ago
- ☆117Updated last year
- FEELnc : FlExible Extraction of LncRNA☆87Updated 9 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆106Updated last year
- Allele-specific alignment sorting☆58Updated 2 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago
- Check strandedness of RNA-Seq fastq files☆124Updated 2 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 5 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆66Updated 8 months ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆45Updated last year
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- Publication quality NGS track plotting☆113Updated 2 years ago
- A small-RNA sequencing analysis pipeline☆85Updated 3 weeks ago
- A versatile aligning pipeline for bisulfite sequencing data☆65Updated 6 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 4 years ago
- ASCAT R package☆183Updated 3 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆56Updated 2 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆149Updated 10 months ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆99Updated 3 weeks ago
- Generate IGV style locus tracks from bigWig files in R☆163Updated 7 months ago
- Unsorted scripts for bioinformatics☆61Updated 3 years ago
- Copy number calling and variant classification using targeted short read sequencing☆136Updated 2 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆110Updated 2 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆108Updated 5 years ago
- phasing and Allele Specific Expression from RNA-seq☆115Updated 11 months ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 5 months ago