ncbi / TPMCalculatorLinks
TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
☆132Updated last year
Alternatives and similar repositories for TPMCalculator
Users that are interested in TPMCalculator are comparing it to the libraries listed below
Sorting:
- RNA-Seq analysis workflow☆104Updated 4 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 7 months ago
- Command-line tool for the visualization of splicing events across multiple samples☆130Updated last year
- Check strandedness of RNA-Seq fastq files☆125Updated 3 years ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated last month
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆172Updated last year
- HMMRATAC peak caller for ATAC-seq data☆99Updated 10 months ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- Copy number calling and variant classification using targeted short read sequencing☆139Updated 2 weeks ago
- Script to automatically create and run IGV snapshot batchscripts☆142Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆109Updated last year
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆151Updated last month
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- Publication quality NGS track plotting☆114Updated 3 years ago
- A versatile aligning pipeline for bisulfite sequencing data☆65Updated 6 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Intervene: a tool for intersection and visualization of multiple genomic region and gene sets☆143Updated last year
- Learning the Variant Call Format☆144Updated last month
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆131Updated last year
- BISulfite-seq CUI Toolkit☆66Updated 8 months ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 7 months ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆83Updated 2 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- ☆151Updated 3 months ago