Fast, efficient RNA-Seq metrics for quality control and process optimization
☆178Nov 2, 2024Updated last year
Alternatives and similar repositories for rnaseqc
Users that are interested in rnaseqc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GTEx & TOPMed data production and analysis pipelines☆404Sep 14, 2025Updated 7 months ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 2 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆313Apr 24, 2026Updated last week
- DTU analysis tool inspired by llamas☆12Sep 28, 2025Updated 7 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆24Feb 12, 2020Updated 6 years ago
- Java utilities for Bioinformatics☆521Mar 25, 2026Updated last month
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆133Oct 14, 2025Updated 6 months ago
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆477Apr 10, 2026Updated 3 weeks ago
- dalmatian is a collection of high-level companion functions for Firecloud and FISS.☆19Mar 31, 2026Updated last month
- GFF and GTF file manipulation and interconversion☆317Mar 31, 2026Updated last month
- annotate a VCF with other VCFs/BEDs/tabixed files☆401Aug 30, 2025Updated 8 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆181Nov 26, 2018Updated 7 years ago
- Plot structural variant signals from many BAMs and CRAMs☆567Jul 13, 2024Updated last year
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 2 weeks ago
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated 2 months ago
- A C++ drop-in replacement of FastQC to assess the quality of sequence read data☆126Apr 23, 2026Updated last week
- BEDOPS: high-performance genomic feature operations☆368Apr 29, 2025Updated last year
- Transcript assembly and quantification for RNA-Seq☆508Dec 26, 2025Updated 4 months ago
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package to quickly obtain count vectors from indexed bam files☆15Jun 13, 2025Updated 10 months ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 11 years ago
- Structural variant toolkit for VCFs☆407Mar 21, 2026Updated last month
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆847Apr 24, 2026Updated last week
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆877Mar 11, 2026Updated last month
- Fast and accurate gene fusion detection from RNA-Seq data☆270Sep 21, 2025Updated 7 months ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Sep 8, 2023Updated 2 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆116Apr 2, 2025Updated last year
- VarDict☆203Jan 5, 2024Updated 2 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆70Jul 18, 2025Updated 9 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Feb 12, 2022Updated 4 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆412Apr 1, 2026Updated last month
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆159Updated this week