davetang / learning_vcf_fileLinks
Learning the Variant Call Format
☆148Updated 6 months ago
Alternatives and similar repositories for learning_vcf_file
Users that are interested in learning_vcf_file are comparing it to the libraries listed below
Sorting:
- GATK RNA-Seq Variant Calling in Nextflow☆138Updated 3 years ago
- Script to automatically create and run IGV snapshot batchscripts☆142Updated 3 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆124Updated this week
- Relevant papers for CNV and SV approaches☆94Updated last year
- Web application to explore the Sequence Read Archive.☆218Updated 6 months ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 5 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆136Updated last year
- FEELnc : FlExible Extraction of LncRNA☆93Updated 6 months ago
- Software program for checking sample matching for NGS data☆137Updated last year
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆159Updated 6 months ago
- Intervene: a tool for intersection and visualization of multiple genomic region and gene sets☆143Updated 2 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆136Updated last year
- deconstructSigs☆144Updated 2 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Genomic Interactive Visualization Engine☆146Updated 3 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆231Updated 8 months ago
- BAM Statistics, Feature Counting and Annotation☆151Updated 2 weeks ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- Learning the Sequence Alignment/Map format☆112Updated 6 months ago
- GWAS Pipeline for H3Africa☆114Updated 8 months ago
- Copy number calling and variant classification using targeted short read sequencing☆142Updated 5 months ago
- Match up paired end fastq files quickly and efficiently.☆153Updated last year
- A small-RNA sequencing analysis pipeline☆98Updated last month
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Updated last week
- Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files☆116Updated 4 years ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆136Updated last week
- Materials for Spring 2018 Applied Genomics Course☆79Updated 7 years ago