davetang / learning_vcf_fileLinks
Learning the Variant Call Format
☆140Updated last year
Alternatives and similar repositories for learning_vcf_file
Users that are interested in learning_vcf_file are comparing it to the libraries listed below
Sorting:
- RNA-Seq analysis workflow☆104Updated 4 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆115Updated 5 months ago
- Check strandedness of RNA-Seq fastq files☆124Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated 8 months ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated 3 weeks ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Web application to explore the Sequence Read Archive.☆218Updated 3 months ago
- Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files☆110Updated 3 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆129Updated 2 weeks ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- Software program for checking sample matching for NGS data☆134Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆130Updated last year
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 12 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Publication quality NGS track plotting☆114Updated 3 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆105Updated 4 years ago
- A small-RNA sequencing analysis pipeline☆87Updated last month
- Copy number calling and variant classification using targeted short read sequencing☆136Updated 2 months ago
- Match up paired end fastq files quickly and efficiently.☆150Updated last year
- dN/dS methods to quantify selection in cancer and somatic evolution☆222Updated 2 months ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆149Updated 10 months ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆111Updated 6 years ago
- BISulfite-seq CUI Toolkit☆65Updated 6 months ago
- A tool for bigWig files.☆119Updated 7 years ago
- Generate IGV style locus tracks from bigWig files in R☆164Updated 8 months ago
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 7 months ago