Learning the Variant Call Format
☆148Aug 4, 2025Updated 7 months ago
Alternatives and similar repositories for learning_vcf_file
Users that are interested in learning_vcf_file are comparing it to the libraries listed below
Sorting:
- Learning the Sequence Alignment/Map format☆112Aug 4, 2025Updated 7 months ago
- Tip and tricks for BAM files☆86Aug 3, 2018Updated 7 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Nov 7, 2016Updated 9 years ago
- The nimble & robust variant annotator☆190Apr 25, 2024Updated last year
- Structural Variant Index☆75Dec 13, 2024Updated last year
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆398Feb 3, 2026Updated last month
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Dec 20, 2010Updated 15 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Apr 9, 2021Updated 4 years ago
- Genomic VCF to tab-separated values☆48Mar 9, 2023Updated 2 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆398Aug 30, 2025Updated 6 months ago
- Structural variant toolkit for VCFs☆397Jan 23, 2026Updated last month
- Tools to work with variant call format files☆266Feb 23, 2026Updated last week
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- Lossless VCF compression☆21Mar 4, 2022Updated 3 years ago
- List of conferences with talk videos posted online☆12Sep 23, 2023Updated 2 years ago
- A read extraction and realignment tool for next generation sequencing data☆105Oct 29, 2022Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 2 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated 4 months ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- ☆46Mar 18, 2025Updated 11 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆279May 21, 2025Updated 9 months ago
- Powerful statistics for VCF files☆73Nov 16, 2025Updated 3 months ago
- Quickly calculate and visualize sequence coverage in alignment files☆100Jun 22, 2019Updated 6 years ago
- Toolset for SV simulation, comparison and filtering☆411Dec 1, 2023Updated 2 years ago
- A structural variation pipeline for short-read sequencing☆201Updated this week
- Personal Cancer Genome Reporter (PCGR)☆274Oct 7, 2025Updated 4 months ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆304Nov 14, 2025Updated 3 months ago
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 6 years ago
- A collection of command line tools for working with sequencing data☆52Feb 23, 2026Updated last week
- Tools for working with SAM/BAM data☆605Dec 22, 2024Updated last year
- Java utilities for Bioinformatics☆518Feb 6, 2026Updated 3 weeks ago
- Jasmine: SV Merging Across Samples☆241Dec 20, 2024Updated last year
- Applied Computational Genomics Course at UU: Spring 2020☆1,075Apr 5, 2024Updated last year
- Scripts for implementing the Tractor pipeline☆53Sep 4, 2025Updated 5 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- A genome browser designed for complex structural variants and long reads.☆297Jun 6, 2025Updated 8 months ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆88Updated this week
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆668Oct 31, 2025Updated 4 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆334May 27, 2025Updated 9 months ago