asntech / pyjasparLinks
pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs
☆34Updated last month
Alternatives and similar repositories for pyjaspar
Users that are interested in pyjaspar are comparing it to the libraries listed below
Sorting:
- A list of alternative splicing analysis resources☆46Updated 8 months ago
- A continually expanding collection of RNA-seq tools☆53Updated 2 months ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 2 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆39Updated last month
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 4 months ago
- Notes on ChIP-seq and other-seq-related tools☆26Updated 4 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 10 months ago
- Analysis pipeline for the GUIDE-seq assay.☆29Updated 4 months ago
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆29Updated 11 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 9 months ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- A script to make downloading of SRA/GEO data easier☆31Updated 2 years ago
- MeRIPseqPipe:An integrated analysis pipeline for MeRIP-seq data based on Nextflow.☆42Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆98Updated this week
- RiboPlotR package for Ribo-plot☆15Updated 5 months ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆55Updated 6 months ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 4 months ago
- Snakemake wrappers for bioinformatics.☆18Updated 2 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated last month
- ☆15Updated 3 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 2 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆82Updated 4 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 7 months ago
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- ☆22Updated last year
- Interactive multiscale visualization for structural variation in human genomes☆70Updated 3 weeks ago
- Transcription Factor Enrichment Analysis☆36Updated this week