Bayesian modeling of multi-tissue ST data, with spot-level deconvolution for Visium-like technologies
☆12Oct 5, 2026Updated last week
Alternatives and similar repositories for cSplotch
Users that are interested in cSplotch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Oct 24, 2025Updated 11 months ago
- ☆14May 1, 2026Updated 5 months ago
- ☆14Mar 28, 2025Updated last year
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- INSPIRE: interpretable, flexible and spatially-aware integration of multiple spatial transcriptomics datasets from diverse sources☆23May 28, 2026Updated 4 months ago
- ☆15Apr 27, 2022Updated 4 years ago
- Code to reproduce analysis of Milo manuscript☆16Aug 3, 2022Updated 4 years ago
- Kdrew's scripts for handling protein complex map data☆14Jun 17, 2026Updated 4 months ago
- TF Binding and Expression Target Analysis 2☆22Nov 19, 2025Updated 10 months ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆28Jul 17, 2024Updated 2 years ago
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated last year
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 11 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Cell identification in high-resolution Spatial Transcriptomics☆17Updated this week
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆46Sep 20, 2024Updated 2 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆19Apr 20, 2024Updated 2 years ago
- Pipeline for processing of GoT-ChA genotyping data and downstream analysis☆16Mar 17, 2025Updated last year
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆23May 19, 2025Updated last year
- JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage☆13Jun 11, 2025Updated last year
- GAM workshop for NHS-R Community Conference 2023☆13Aug 8, 2025Updated last year
- ☆15Jan 14, 2025Updated last year
- A Linux CPU temperature terminal monitor with history charts.☆13Nov 20, 2015Updated 10 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆24Mar 22, 2023Updated 3 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆21Sep 21, 2026Updated 3 weeks ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆18Apr 8, 2021Updated 5 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆32Feb 26, 2020Updated 6 years ago
- ☆18Dec 4, 2025Updated 10 months ago
- Repository that contains all the data, code and manuscript files for a paper that explores the use of GAMs in biomedical research.☆22Jun 3, 2024Updated 2 years ago
- ☆15Jun 4, 2023Updated 3 years ago
- Package for analysis and experimental design of multiplexed imaging data☆12Mar 3, 2025Updated last year
- Code associated with the data analysis for Miyoshi & Morabito 2024☆31Jul 8, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆42Apr 23, 2024Updated 2 years ago
- single cell analysis of treatment naive and treated human PDAC☆27May 27, 2022Updated 4 years ago
- A sequence alignment tool☆17Oct 29, 2016Updated 9 years ago
- CliXO algorithm re-implemented☆16Nov 9, 2021Updated 4 years ago
- HiDeF (Hierarchical community Decoding Framework)☆15Jan 30, 2024Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆31Mar 27, 2026Updated 6 months ago
- Web client code for the MongoChem project☆10Mar 3, 2021Updated 5 years ago