A fine-tuned ESM-2 model to accurately detect phage depolymerases in their genomes.
☆15Feb 5, 2025Updated last year
Alternatives and similar repositories for DepoScope
Users that are interested in DepoScope are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detection of phage RBPs based on protein domains and machine learning☆34Feb 5, 2025Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆41Apr 20, 2026Updated 5 months ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- multiPhATE with comparative genomics☆18Jun 26, 2026Updated 3 months ago
- Throughput PhATE processing of draft or finished phage genomes☆14Apr 19, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- RBPseg: A Tool for Tail Fiber Structure Prediction☆16Jan 27, 2026Updated 8 months ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆38May 25, 2026Updated 4 months ago
- Pairwise machine learning models for phage-host interaction prediction☆23Jun 23, 2024Updated 2 years ago
- ☆15Oct 14, 2023Updated 3 years ago
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆16Aug 28, 2024Updated 2 years ago
- ☆18Jun 5, 2026Updated 4 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- PHANOTATE: a gene caller for phages.☆94Dec 2, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆83Apr 16, 2025Updated last year
- Learn Julia in one workday!☆13Jan 7, 2020Updated 6 years ago
- ☆11Jul 3, 2022Updated 4 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- Conditional Auto-Regressive LASSO in R☆19Nov 11, 2022Updated 3 years ago
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale d…☆267Updated this week
- De novo VIral Genome Annotator☆26Jan 11, 2026Updated 9 months ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆56Sep 28, 2026Updated 2 weeks ago
- ☆27Jun 20, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆22Dec 9, 2023Updated 2 years ago
- Unleash the full power of your k-mers!☆25Sep 18, 2026Updated last month
- Detection of the structural, evolutionary and functional relationship between different proteins and protein families requires comparativ…☆15Sep 22, 2023Updated 3 years ago
- Ensemble binning strategies for combining the output of multiple binning methods.☆23Mar 11, 2023Updated 3 years ago
- ☆20Apr 24, 2025Updated last year
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆81Sep 20, 2023Updated 3 years ago
- Virus Identification By iteRative ANnoTation☆205Apr 15, 2024Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆56Jul 3, 2024Updated 2 years ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆38Apr 26, 2026Updated 5 months ago
- Genome-scale protein function annotation☆37Oct 5, 2026Updated last week
- Phage Annotation using Protein Structures☆175Updated this week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 8 months ago
- ☆21May 31, 2025Updated last year
- ☆20Nov 17, 2022Updated 3 years ago
- Python module for parsing, writing, aligning, and manipulating glycan structrures☆10Oct 7, 2026Updated last week