ultimatesource / denovogearLinks
A program to detect denovo-variants using next-generation sequencing data.
☆55Updated 5 years ago
Alternatives and similar repositories for denovogear
Users that are interested in denovogear are comparing it to the libraries listed below
Sorting:
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Data and information about the Polaris study☆54Updated 6 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆88Updated 6 years ago
- An awk-like VCF parser☆56Updated last year
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- BigWig and BAM utilities☆99Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- Detect novel (and reference) STR expansions from short-read data☆69Updated 3 weeks ago
- ☆78Updated 11 years ago
- ☆55Updated 5 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- RUFUS k-mer based genomic variant detection☆54Updated last month
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Updated last year
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 5 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated 2 months ago
- UCSC Nanopore☆44Updated 6 years ago
- 10x Genomics Reads Simulator☆46Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- A C library for handling bigWig files☆81Updated 11 months ago
- TIDDIT - structural variant calling☆78Updated 2 weeks ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Structural Variant Index☆75Updated last year