ultimatesource / denovogearLinks
A program to detect denovo-variants using next-generation sequencing data.
☆53Updated 5 years ago
Alternatives and similar repositories for denovogear
Users that are interested in denovogear are comparing it to the libraries listed below
Sorting:
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- An awk-like VCF parser☆56Updated last year
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆87Updated 6 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Data and information about the Polaris study☆53Updated 5 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆107Updated 3 years ago
- ☆78Updated 11 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- A collection of command line tools for working with sequencing data☆51Updated last week
- ☆95Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Structural Variant Index☆75Updated 9 months ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated last month
- Assembly Based ReAligner☆74Updated 7 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Ancestry and Kinship Tools☆70Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Updated 10 months ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated last year
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago