DIAMOND online documentation
☆10Sep 2, 2020Updated 5 years ago
Alternatives and similar repositories for diamond_docs
Users that are interested in diamond_docs are comparing it to the libraries listed below
Sorting:
- kProcessor: kmers processing framework.☆10Oct 1, 2023Updated 2 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11May 7, 2018Updated 7 years ago
- Bioinformatics scripts☆14Dec 23, 2024Updated last year
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Updated this week
- k-mer similarity analysis pipeline☆22Nov 20, 2025Updated 4 months ago
- Collection of Sphinx extensions similar to (but more flexible than) numpydoc☆12Updated this week
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆18Jan 7, 2026Updated 2 months ago
- Prediction of protein melting temperatures directly from sequences☆12Apr 16, 2024Updated last year
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Aug 7, 2017Updated 8 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Nov 20, 2017Updated 8 years ago
- ☆14Apr 30, 2020Updated 5 years ago
- PGPg_finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. …☆29Jan 20, 2026Updated 2 months ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆17Jan 14, 2025Updated last year
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- Utilities written for bioinformatics☆17Sep 27, 2022Updated 3 years ago
- gfftools - Galaxy toolshed repository☆15Sep 13, 2017Updated 8 years ago
- Calculate GC% and GC deviation for circular genomes☆17Oct 15, 2025Updated 5 months ago
- openASO is a project designed to identify regulatory regions of an RNA that can be targeted by antisense oligonucleotides.☆11Sep 30, 2021Updated 4 years ago
- ☆13Feb 22, 2022Updated 4 years ago
- Deep Learning tool trained on protein sequence embeddings from protein language models to accurately detect remote homologues for CATH su…☆15Jun 22, 2022Updated 3 years ago
- A series of small Biopython scripts for downloading sequence data off NCBI's Genbank.☆15May 2, 2017Updated 8 years ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23Mar 4, 2026Updated 2 weeks ago
- Build contrasts for models defined with formulaic☆12Updated this week
- ☆20Mar 29, 2022Updated 3 years ago
- Efficient merging of structural variants from multiple SV callers and samples☆33Feb 27, 2026Updated 3 weeks ago
- ☆11Oct 21, 2022Updated 3 years ago
- Ultimate NLP Toolkit for GPUs: RAPIDS-AI, PyTorch, NeMo, Tensorboard, TensorRT, CUDA 10.1☆10Mar 19, 2020Updated 6 years ago
- Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibilit…☆12Jun 3, 2025Updated 9 months ago
- Datasets used in the tox21 challenge☆11Nov 6, 2019Updated 6 years ago
- Repository of sequences to annotate hydrocarbon-degrading genes/proteins from genomes/metagenomes☆12May 10, 2024Updated last year
- ☆19Oct 4, 2023Updated 2 years ago
- ☆16Mar 1, 2026Updated 3 weeks ago
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 4 years ago
- ☆11Jun 29, 2014Updated 11 years ago
- ML toolset for creating TED: The Encyclopedia of Domains☆26May 29, 2025Updated 9 months ago
- Unix-based RNA-seq quantification pipeline☆10Nov 18, 2015Updated 10 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆32Oct 25, 2017Updated 8 years ago
- StrainEst - abundance estimation of strains☆20Jan 17, 2020Updated 6 years ago