DIAMOND online documentation
☆10Sep 2, 2020Updated 5 years ago
Alternatives and similar repositories for diamond_docs
Users that are interested in diamond_docs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11May 7, 2018Updated 8 years ago
- Bioinformatics scripts☆14Dec 23, 2024Updated last year
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Updated this week
- k-mer similarity analysis pipeline☆24Jul 27, 2026Updated 2 weeks ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Aug 7, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Collection of Sphinx extensions similar to (but more flexible than) numpydoc☆12Aug 4, 2026Updated last week
- Prediction of protein melting temperatures directly from sequences☆14Apr 16, 2024Updated 2 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Nov 20, 2017Updated 8 years ago
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆18Jun 21, 2026Updated last month
- ☆14Apr 30, 2020Updated 6 years ago
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- ☆11Oct 21, 2022Updated 3 years ago
- Utilities written for bioinformatics☆17Sep 27, 2022Updated 3 years ago
- gfftools - Galaxy toolshed repository☆15Sep 13, 2017Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Calculate GC% and GC deviation for circular genomes☆17Oct 15, 2025Updated 9 months ago
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- ☆13Feb 22, 2022Updated 4 years ago
- openASO is a project designed to identify regulatory regions of an RNA that can be targeted by antisense oligonucleotides.☆14Sep 30, 2021Updated 4 years ago
- Repository of sequences to annotate hydrocarbon-degrading genes/proteins from genomes/metagenomes☆14May 10, 2024Updated 2 years ago
- A series of small Biopython scripts for downloading sequence data off NCBI's Genbank.☆15May 2, 2017Updated 9 years ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23Jul 30, 2026Updated last week
- Build contrasts for models defined with formulaic☆13Aug 3, 2026Updated last week
- Ultimate NLP Toolkit for GPUs: RAPIDS-AI, PyTorch, NeMo, Tensorboard, TensorRT, CUDA 10.1☆10Mar 19, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆20Mar 29, 2022Updated 4 years ago
- Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibilit…☆12Jul 28, 2026Updated last week
- Deep Learning tool trained on protein sequence embeddings from protein language models to accurately detect remote homologues for CATH su…☆14Jun 22, 2022Updated 4 years ago
- Datasets used in the tox21 challenge☆11Nov 6, 2019Updated 6 years ago
- ☆16May 23, 2026Updated 2 months ago
- XCDF: eXplicitly Compacted Data Format. See documentation at Read the Docs:☆15Dec 18, 2023Updated 2 years ago
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 4 years ago
- ☆11Jun 29, 2014Updated 12 years ago
- Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.☆12Feb 2, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- collection of bioinformatic scripts☆33May 3, 2024Updated 2 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆32Oct 25, 2017Updated 8 years ago
- Unix-based RNA-seq quantification pipeline☆10Nov 18, 2015Updated 10 years ago
- Highly accurate discovery of terpene synthases powered by machine learning☆17Updated this week
- MNase-seq analysis pipeline using BWA and DANPOS2.☆13Feb 23, 2026Updated 5 months ago
- ☆19Aug 31, 2025Updated 11 months ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆33May 24, 2023Updated 3 years ago