deepomicslab / SpecImmuneLinks
Accurate Typing of Diverse Immune-Related Gene Families from Long-Read Sequencing Data. It can handle HLA, KIR, IG, TCR, CYP gene families. It supports both WGS and amplicon data. It supports PacBio and Nanopore data.
β29Updated last week
Alternatives and similar repositories for SpecImmune
Users that are interested in SpecImmune are comparing it to the libraries listed below
Sorting:
- The First Innovative Tool to Comprehensively Assess T Cell Statesβ107Updated 5 months ago
- π #1 Multi-LLM consensus framework | 540+ stars | 95% accuracy | 10+ LLM providers | Leading cell annotation toolβ554Updated this week
- GENERator: A Long-Context Generative Genomic Foundation Modelβ430Updated last month
- Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for allβ125Updated 4 months ago
- GENERanno: A Genomic Foundation Model for Metagenomic Annotationβ300Updated last month
- SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.β101Updated 5 months ago
- CASSIA: A multiagent llm based single cell Annottaion frameworkβ45Updated last month
- β45Updated 5 months ago
- DeepSEA (Bioinformatics) implemented by tensorflow.β22Updated 5 years ago
- SSAlignβ44Updated last week
- A PubMed MCP server.β60Updated 3 months ago
- A toolkit for comprehensive and efficient analysis and comparison of ramanomes.β57Updated last month
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencingβ57Updated 8 years ago
- Electron-density-informed effective and reliable de novo molecular design and optimization with ED2Molβ97Updated this week
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rβ¦β48Updated 7 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing dataβ20Updated 3 years ago
- for visual evaluation of read support for structural variationβ54Updated last year
- Pipeline for calling poly(A) tail lengths from nanopore direct RNA data using nanopolishβ10Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of referenceβ¦β67Updated 2 years ago
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolishβ11Updated 5 years ago
- PyTorch implementation of <Neural-based Mixture Probabilistic Query Embedding for Answering FOL queries on Knowledge Graphs>β33Updated 2 years ago
- NGS-PrimerPlex is a high-throughput tool for mupltiplex primer designβ59Updated 3 months ago
- Plant genome assembly and annotation pipeline using snakemakeβ46Updated 3 months ago
- A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing efficiβ¦β14Updated 6 years ago
- iTAKβ41Updated last year
- TIDDIT - structural variant callingβ76Updated 4 months ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studiesβ32Updated 2 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing dataβ25Updated 3 years ago
- Error correction of ONT transcript readsβ58Updated last year
- Convert genbank files to a swath of other formatsβ18Updated last year