trinityrnaseq / RNASeq_Trinity_Tuxedo_Workshop
materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.
☆48Updated 8 years ago
Alternatives and similar repositories for RNASeq_Trinity_Tuxedo_Workshop
Users that are interested in RNASeq_Trinity_Tuxedo_Workshop are comparing it to the libraries listed below
Sorting:
- FEELnc : FlExible Extraction of LncRNA☆87Updated 8 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆117Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- Same species annotation lift over pipeline.☆97Updated last year
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆102Updated 2 weeks ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- my bin directory☆45Updated 6 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated last year
- Dfam Transposable Element Tools Docker container.☆91Updated last week
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆55Updated 5 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆110Updated last year
- Tip and tricks for BAM files☆85Updated 6 years ago
- BAM Statistics, Feature Counting and Annotation☆149Updated 2 months ago
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆92Updated 6 months ago
- Course material for the metagenomics course☆44Updated 3 years ago
- ☆39Updated this week
- Automatically exported from code.google.com/p/ea-utils☆96Updated last year
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆128Updated 4 months ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- A small-RNA sequencing analysis pipeline☆84Updated last week
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆96Updated this week
- Next-Generation Sequencing(NGS) toolkits.☆45Updated 9 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆138Updated 3 years ago