trinityrnaseq / RNASeq_Trinity_Tuxedo_Workshop
materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.
☆45Updated 7 years ago
Related projects: ⓘ
- Variant Calling Pipeline Using GATK4 and Nextflow☆51Updated last year
- FEELnc : FlExible Extraction of LncRNA☆80Updated last week
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆113Updated 4 years ago
- Same species annotation lift over pipeline.☆95Updated last year
- ☆80Updated this week
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.☆86Updated 2 months ago
- web documentation for Trinotate☆47Updated last year
- 10x Genomics Linked-Read Diploid De Novo Assembler☆64Updated 5 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆96Updated 8 months ago
- Automatically exported from code.google.com/p/ea-utils☆95Updated last year
- Development version of Easyfig☆87Updated 8 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆68Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated 3 weeks ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆89Updated last week
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆92Updated 8 months ago
- ☆110Updated 2 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 3 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆84Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆47Updated 6 months ago
- ☆95Updated this week
- Metatranscriptomics Tutorial☆54Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆125Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 9 months ago
- Genome Scripts used in fungal comparative genomics☆65Updated 3 years ago
- A set of functions to visualise genotypes based on a VCF☆83Updated 2 years ago
- Issue tracker for the Biostar Handbook☆57Updated 2 years ago
- This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.☆33Updated 5 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆135Updated 4 months ago