h3abionet / h3agwasLinks
GWAS Pipeline for H3Africa
☆113Updated 4 months ago
Alternatives and similar repositories for h3agwas
Users that are interested in h3agwas are comparing it to the libraries listed below
Sorting:
- RNA-Seq analysis workflow☆105Updated 4 years ago
- Learning the Variant Call Format☆144Updated 2 months ago
- Software program for checking sample matching for NGS data☆137Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆147Updated last month
- GATK RNA-Seq Variant Calling in Nextflow☆136Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆170Updated 4 months ago
- Relevant papers for CNV and SV approaches☆94Updated 11 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆58Updated 2 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- A small-RNA sequencing analysis pipeline☆94Updated 4 months ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF☆158Updated last month
- Check strandedness of RNA-Seq fastq files☆125Updated 3 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆154Updated 2 years ago
- WisecondorX — An evolved WISECONDOR☆105Updated last month
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆131Updated last year
- Tutorials on accessing public reference and genomic data☆30Updated 7 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆110Updated last year
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆110Updated 5 years ago
- Documentation archive for GATK tools and workflows☆88Updated 5 years ago
- Web application to explore the Sequence Read Archive.☆217Updated 2 months ago
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 8 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆171Updated last year
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 months ago
- microRNA profiling pipeline☆79Updated 3 years ago
- Materials for Spring 2018 Applied Genomics Course☆79Updated 6 years ago
- Reference data: BED files, genes, transcripts, variations.☆85Updated 7 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago