h3abionet / h3agwas
GWAS Pipeline for H3Africa
☆106Updated last month
Related projects ⓘ
Alternatives and complementary repositories for h3agwas
- Variant Calling Pipeline Using GATK4 and Nextflow☆52Updated last year
- RNA-Seq analysis workflow☆104Updated 3 years ago
- Learning the Variant Call Format☆137Updated 7 months ago
- Relevant papers for CNV and SV approaches☆94Updated this week
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆85Updated last year
- Discovering known and novel miRNAs from small RNA sequencing data☆138Updated 2 months ago
- A short tutorial on how to use RSEM☆133Updated 4 years ago
- Script to automatically create and run IGV snapshot batchscripts☆137Updated last year
- Check strandedness of RNA-Seq fastq files☆114Updated 2 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆153Updated last year
- A structural variation pipeline for short-read sequencing☆171Updated this week
- Workflows for germline short variant discovery with GATK4☆133Updated 3 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆103Updated 4 years ago
- ASCAT R package☆165Updated last week
- WisecondorX — An evolved WISECONDOR☆94Updated last month
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆76Updated 4 years ago
- A small-RNA sequencing analysis pipeline☆74Updated 3 weeks ago
- Issue tracker for the Biostar Handbook☆57Updated 2 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆132Updated last year
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆224Updated 2 weeks ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆88Updated last week
- Software program for checking sample matching for NGS data☆125Updated 4 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆106Updated last year
- Genomic Interactive Visualization Engine☆144Updated last year
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆111Updated 2 weeks ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆133Updated last week
- Tutorials on accessing public reference and genomic data☆29Updated 2 years ago
- Materials for Spring 2018 Applied Genomics Course☆77Updated 5 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆242Updated last year