GWAS Pipeline for H3Africa
☆114May 21, 2025Updated 9 months ago
Alternatives and similar repositories for h3agwas
Users that are interested in h3agwas are comparing it to the libraries listed below
Sorting:
- ☆12Mar 15, 2025Updated 11 months ago
- Genotype Imputation Pipeline for H3Africa☆24Nov 5, 2024Updated last year
- Codebook from my GWAS cookbook☆193May 26, 2022Updated 3 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 3 years ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 6 years ago
- H3ABioNet 16S rDNA diverstity analysis package☆19May 20, 2019Updated 6 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- A pipeline for Human GWAS analysis that accomodates both Affymetrix (raw .CEL files) and Illumina (Plink binaries) data☆12May 14, 2018Updated 7 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 6 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 2 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- Consensus assembly and variant calling workflow.☆12May 26, 2015Updated 10 years ago
- A Nextflow Genome-Wide Association Study (GWAS) Pipeline☆36Jun 26, 2025Updated 8 months ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- ☆69Updated this week
- As part of the COVID-19 Host Genetics Global initative, this repo serves to corroborate sample scripts for sequencing QC.☆12Jul 30, 2020Updated 5 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- ☆23Nov 9, 2025Updated 4 months ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 3 months ago
- Fast and scalable variant annotation tool☆30May 1, 2022Updated 3 years ago
- GTEx & TOPMed data production and analysis pipelines☆397Sep 14, 2025Updated 5 months ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 3 years ago
- ☆21Oct 24, 2020Updated 5 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- PRS pipeline using PRS_CS☆15Oct 21, 2025Updated 4 months ago
- GWAS genetics Fine-mapping method☆26Oct 16, 2024Updated last year
- ☆24Dec 10, 2018Updated 7 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Jul 9, 2021Updated 4 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Dec 10, 2025Updated 2 months ago
- Convert GWAS summary statistics to VCF☆48Mar 11, 2023Updated 2 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Oct 29, 2020Updated 5 years ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 3 years ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- tips and tricks in genome-wide association studies - a tutorial☆14Jul 25, 2023Updated 2 years ago