schatzlab / appliedgenomics2018
Materials for Spring 2018 Applied Genomics Course
☆78Updated 6 years ago
Alternatives and similar repositories for appliedgenomics2018:
Users that are interested in appliedgenomics2018 are comparing it to the libraries listed below
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- ☆48Updated 4 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- Issue tracker for the Biostar Handbook☆62Updated 2 years ago
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆45Updated 2 years ago
- The wiki repo, with pull request enabled, for the rnaseq_tutorial☆26Updated 4 years ago
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- Relevant papers for CNV and SV approaches☆94Updated 4 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- ☆67Updated last year
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 12 years ago
- ☆78Updated 11 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 weeks ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆89Updated 3 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- ☆70Updated 3 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- Student website repo for 2015/2016 Canadian Bioinformatics Workshops☆34Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.☆46Updated 8 years ago
- Intro to Shell for Bioinformatics - with STG examples☆28Updated 8 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- A small-RNA sequencing analysis pipeline☆80Updated 3 weeks ago