schatzlab / appliedgenomics2018
Materials for Spring 2018 Applied Genomics Course
☆78Updated 5 years ago
Alternatives and similar repositories for appliedgenomics2018:
Users that are interested in appliedgenomics2018 are comparing it to the libraries listed below
- Tip and tricks for BAM files☆84Updated 6 years ago
- ☆70Updated 2 years ago
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- ☆78Updated 10 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆85Updated last year
- Relevant papers for CNV and SV approaches☆94Updated 2 months ago
- The wiki repo, with pull request enabled, for the rnaseq_tutorial☆25Updated 4 years ago
- ☆48Updated 3 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆53Updated last year
- Allele-specific alignment sorting☆54Updated 2 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- ☆65Updated last year
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.☆46Updated 8 years ago
- Learning the Variant Call Format☆138Updated 9 months ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆42Updated 2 years ago
- Check strandedness of RNA-Seq fastq files☆118Updated 2 years ago
- GWAS Pipeline for H3Africa☆108Updated last month
- FEELnc : FlExible Extraction of LncRNA☆84Updated 4 months ago
- RNA-Seq analysis workflow☆103Updated 3 years ago
- Scripts for next generation sequencing☆48Updated 5 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆56Updated 4 years ago
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆96Updated 3 years ago
- New user☆42Updated 4 years ago
- A small-RNA sequencing analysis pipeline☆77Updated last week
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆106Updated 2 weeks ago
- Powerful statistics for VCF files☆67Updated last year