Materials for Spring 2018 Applied Genomics Course
☆80Jan 29, 2019Updated 7 years ago
Alternatives and similar repositories for appliedgenomics2018
Users that are interested in appliedgenomics2018 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Applied Computational Genomics Course at UU: Spring 2020☆1,132Apr 5, 2024Updated 2 years ago
- Introduction to Python3☆11Oct 26, 2020Updated 6 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 9 years ago
- This repository is deprecated, please use the link to the right.☆23Dec 11, 2018Updated 7 years ago
- useful command-line tools written to showcase hts-nim☆50Nov 10, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated 2 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Apr 19, 2020Updated 6 years ago
- PHasing Reads in Areas Of Homozygosity☆14Feb 12, 2025Updated last year
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 11 months ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 10 years ago
- Unix, R and python tools for genomics and data science☆1,407Aug 25, 2025Updated last year
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- Code and examples for JHU Computational Genomics class☆319Oct 22, 2024Updated 2 years ago
- Short lessons from FAS Informatics coffee hour☆161Jul 6, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- plane sweep filtering genome alignments☆24Sep 28, 2026Updated last month
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 4 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Oct 20, 2026Updated 2 weeks ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆59Feb 17, 2022Updated 4 years ago
- ☆17Mar 2, 2024Updated 2 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- ☆11Dec 18, 2025Updated 10 months ago
- Materials for Spring 2021 Applied Genomics Course☆54Apr 21, 2021Updated 5 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 11 months ago
- Phylogenetic tools for Eco-phylogenetics☆16Oct 10, 2024Updated 2 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆11Sep 17, 2020Updated 6 years ago
- ☆11Jun 23, 2026Updated 4 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- basic walk-throughs for alignment and variant calling from NGS sequencing data☆221Jan 10, 2025Updated last year
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- A filter algorithm with program to filter an alignment or mapping file☆13May 15, 2025Updated last year
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆37Dec 4, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scripts for NGS processing☆16Sep 6, 2017Updated 9 years ago
- intro to programming for IE2 evolution students☆12Jan 31, 2024Updated 2 years ago
- ☆13Dec 10, 2025Updated 10 months ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆40Dec 30, 2025Updated 10 months ago
- GenePiper☆12Mar 13, 2022Updated 4 years ago
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Mar 5, 2022Updated 4 years ago
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Mar 20, 2025Updated last year