gencorefacility / variant-calling-pipeline-gatk4Links
Variant Calling Pipeline Using GATK4 and Nextflow
☆56Updated 2 years ago
Alternatives and similar repositories for variant-calling-pipeline-gatk4
Users that are interested in variant-calling-pipeline-gatk4 are comparing it to the libraries listed below
Sorting:
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 weeks ago
- BAM Statistics, Feature Counting and Annotation☆149Updated 3 weeks ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 3 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 11 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- WisecondorX — An evolved WISECONDOR☆101Updated last month
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆115Updated last month
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆106Updated last month
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆103Updated last month
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆102Updated 4 years ago
- Plotting tools for nanopore methylation data☆93Updated last week
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆101Updated 6 months ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆93Updated 2 months ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 4 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆72Updated 3 years ago
- Segmented HAPlotype Estimation and Imputation Tool☆84Updated last week
- A suite of tools for detecting expansions of short tandem repeats☆82Updated 2 years ago
- A small-RNA sequencing analysis pipeline☆89Updated 2 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆132Updated last month
- GenMap - Fast and Exact Computation of Genome Mappability☆109Updated last year
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- ☆99Updated last week
- Simple code snippets and data for the One Flowcell - One Assembly study☆35Updated 7 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago