gencorefacility / variant-calling-pipeline-gatk4Links
Variant Calling Pipeline Using GATK4 and Nextflow
☆56Updated 2 years ago
Alternatives and similar repositories for variant-calling-pipeline-gatk4
Users that are interested in variant-calling-pipeline-gatk4 are comparing it to the libraries listed below
Sorting:
- FEELnc : FlExible Extraction of LncRNA☆89Updated 10 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 2 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆101Updated 5 months ago
- Python programs for processing GFF3 files☆98Updated last year
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated 3 weeks ago
- WisecondorX — An evolved WISECONDOR☆99Updated 2 weeks ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆112Updated last year
- Relevant papers for CNV and SV approaches☆94Updated 8 months ago
- web documentation for Trinotate☆48Updated 2 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆114Updated last week
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆106Updated 3 weeks ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆100Updated last month
- Software for clustering de novo assembled transcripts and counting overlapping reads☆72Updated 3 years ago
- A small-RNA sequencing analysis pipeline☆87Updated last month
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 4 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆28Updated 5 months ago
- ☆98Updated 3 weeks ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 10 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- ☆123Updated 8 months ago
- materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.☆47Updated 8 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆129Updated 2 weeks ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆93Updated last month
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- A versatile aligning pipeline for bisulfite sequencing data☆65Updated 6 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago