gencorefacility / variant-calling-pipeline-gatk4Links
Variant Calling Pipeline Using GATK4 and Nextflow
☆55Updated 2 years ago
Alternatives and similar repositories for variant-calling-pipeline-gatk4
Users that are interested in variant-calling-pipeline-gatk4 are comparing it to the libraries listed below
Sorting:
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 3 weeks ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 8 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆99Updated 3 weeks ago
- Same species annotation lift over pipeline.☆97Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆69Updated 9 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆102Updated last month
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- ☆39Updated 3 weeks ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆101Updated 3 months ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- A small-RNA sequencing analysis pipeline☆85Updated this week
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆111Updated last month
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆26Updated 4 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- Dfam Transposable Element Tools Docker container.☆91Updated last month
- Allele-specific alignment sorting☆56Updated 2 years ago
- A set of functions to visualise genotypes based on a VCF☆86Updated 3 years ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated this week
- Relevant papers for CNV and SV approaches☆94Updated 7 months ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆92Updated last week
- BAM Statistics, Feature Counting and Annotation☆150Updated 3 months ago
- ☆48Updated 9 months ago