Learning the Sequence Alignment/Map format
☆115Aug 4, 2025Updated last year
Alternatives and similar repositories for learning_bam_file
Users that are interested in learning_bam_file are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Learning the Variant Call Format☆152Aug 4, 2025Updated last year
- Quickly calculate and visualize sequence coverage in alignment files☆102Jun 22, 2019Updated 7 years ago
- Genome Interval Arithmetic in R☆97Jul 9, 2026Updated 3 months ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 3 years ago
- Tip and tricks for BAM files☆87Aug 3, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆20Dec 8, 2020Updated 5 years ago
- Analysis pipeline for cancer sequencing data☆112Sep 28, 2026Updated last month
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- Plot structural variant signals from many BAMs and CRAMs☆574Jul 13, 2024Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆38Jul 1, 2024Updated 2 years ago
- Genomic VCF to tab-separated values☆49May 23, 2026Updated 5 months ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆21Jun 13, 2022Updated 4 years ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆689Oct 2, 2026Updated last month
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34May 5, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Sequana: a set of Snakemake NGS pipelines☆151Oct 5, 2026Updated 3 weeks ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Tools for next-generation sequencing analysis☆90Jun 25, 2019Updated 7 years ago
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆20Oct 27, 2026Updated last week
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆879Updated this week
- Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data☆18Nov 26, 2021Updated 4 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆343Oct 23, 2026Updated last week
- The python binding for D4 format☆16Oct 22, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- vembrane filters, sorts, and transforms VCF records using python expressions☆71Updated this week
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Nov 3, 2021Updated 5 years ago
- a set of NGS pipelines☆25Oct 16, 2026Updated 2 weeks ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated 2 years ago
- Read CRAM v3 and v2 in node or in the browser☆18Updated this week
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Mar 27, 2020Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Oct 23, 2026Updated last week
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Nov 19, 2019Updated 6 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆18Mar 10, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BWK awk modified for biological data☆643Aug 11, 2022Updated 4 years ago
- Structural variant caller for real-time long-read sequencing data☆64Dec 1, 2022Updated 3 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- Personal Cancer Genome Reporter (PCGR)☆284Updated this week
- VarDict☆204Jan 5, 2024Updated 2 years ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆549Oct 4, 2026Updated 3 weeks ago
- Method to detect exonic CNVs in NGS Gene Targeted Panels☆16Dec 3, 2019Updated 6 years ago