ewels / AWS-iGenomes

Related projects: ⓘ

• stevekm / IGV-snapshot-automator
  Script to automatically create and run IGV snapshot batchscripts
  ☆137Updated last year
• ndaniel / fusioncatcher
  Finder of Somatic Fusion Genes in RNA-seq data
  ☆141Updated last year
• mozack / abra2
  ABRA2
  ☆90Updated last year
• geocarvalho / sv-cnv-studies
  Relevant papers for CNV and SV approaches
  ☆94Updated 3 weeks ago
• SciLifeLab / NGI-RNAseq
  Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
  ☆51Updated 6 years ago
• AstraZeneca-NGS / VarDict
  VarDict
  ☆187Updated 8 months ago
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆131Updated last year
• ExpressionAnalysis / ea-utils
  Automatically exported from code.google.com/p/ea-utils
  ☆95Updated last year
• CCDG / Pipeline-Standardization
  ☆81Updated 5 years ago
• parklab / NGSCheckMate
  Software program for checking sample matching for NGS data
  ☆122Updated 2 months ago
• Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine
  Genomic Interactive Visualization Engine
  ☆143Updated last year
• dkoboldt / varscan
  Variant calling and somatic mutation/CNV detection for next-generation sequencing data
  ☆152Updated last year
• gavinha / TitanCNA
  Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
  ☆93Updated 3 years ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆76Updated last year
• GreenleafLab / NucleoATAC
  nucleosome calling using ATAC-seq
  ☆105Updated 3 years ago
• BoevaLab / FREEC
  Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
  ☆146Updated 3 weeks ago
• sztup / scarHRD
  ☆102Updated last year
• Illumina / Pisces
  Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
  ☆94Updated 2 years ago
• gatk-workflows / gatk4-somatic-snvs-indels
  This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…
  ☆76Updated 4 years ago
• parklab / bamsnap
  ☆110Updated 2 years ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆103Updated 3 years ago
• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆107Updated 2 months ago
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆51Updated last year
• lima1 / PureCN
  Copy number calling and variant classification using targeted short read sequencing
  ☆127Updated this week
• relipmoc / skewer
  ☆95Updated last year
• cancerit / cgpBattenberg
  Battenberg algorithm and associated implementation script
  ☆51Updated 3 years ago
• tderrien / FEELnc
  FEELnc : FlExible Extraction of LncRNA
  ☆80Updated this week
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆85Updated 3 weeks ago
• nygenome / lancet
  Microassembly based somatic variant caller for NGS data
  ☆153Updated 2 years ago
• CRG-Barcelona / bwtool
  A tool for bigWig files.
  ☆116Updated 6 years ago