ewels / AWS-iGenomesLinks
Documentation and description of AWS iGenomes S3 resource.
☆114Updated 8 months ago
Alternatives and similar repositories for AWS-iGenomes
Users that are interested in AWS-iGenomes are comparing it to the libraries listed below
Sorting:
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆134Updated 2 years ago
- Copy number calling and variant classification using targeted short read sequencing☆137Updated 3 months ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- Software program for checking sample matching for NGS data☆134Updated last year
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆154Updated 3 weeks ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆113Updated 6 years ago
- Analysis pipeline for the GUIDE-seq assay.☆78Updated 2 years ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Learning the Variant Call Format☆142Updated this week
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- ☆82Updated 6 years ago
- Reference data: BED files, genes, transcripts, variations.☆83Updated 7 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆150Updated last week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆161Updated 2 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆125Updated 5 years ago
- Example Nextflow pipelines and programming techniques☆107Updated 2 months ago
- RNA-Seq analysis workflow☆104Updated 4 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆131Updated 11 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆105Updated 2 months ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 weeks ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated 9 months ago
- A small-RNA sequencing analysis pipeline☆89Updated 2 months ago
- Annotates variants in MAF with OncoKB annotation.☆133Updated 3 weeks ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆86Updated last month
- A tool for bigWig files.☆119Updated 7 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆173Updated last year