ewels / AWS-iGenomesLinks
Documentation and description of AWS iGenomes S3 resource.
☆114Updated 7 months ago
Alternatives and similar repositories for AWS-iGenomes
Users that are interested in AWS-iGenomes are comparing it to the libraries listed below
Sorting:
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆111Updated 6 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆149Updated 10 months ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Software program for checking sample matching for NGS data☆134Updated last year
- A small-RNA sequencing analysis pipeline☆87Updated last month
- xHLA: Fast and accurate HLA typing from short read sequence data☆112Updated last year
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- Characterization of Germline variants☆98Updated 3 years ago
- RNA-Seq analysis workflow☆104Updated 4 years ago
- Relevant papers for CNV and SV approaches☆94Updated 8 months ago
- Copy number calling and variant classification using targeted short read sequencing☆136Updated 2 months ago
- ☆82Updated 6 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- Learning the Variant Call Format☆140Updated last year
- Microassembly based somatic variant caller for NGS data☆155Updated 3 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆85Updated 2 weeks ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated 4 months ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- NEAT read simulation tools☆98Updated 3 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Updated 5 years ago
- FEELnc : FlExible Extraction of LncRNA☆89Updated 10 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆102Updated last month
- Tip and tricks for BAM files☆85Updated 6 years ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆153Updated this week
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆162Updated 10 months ago
- Annotates variants in MAF with OncoKB annotation.☆132Updated 3 weeks ago