ewels / AWS-iGenomesLinks
Documentation and description of AWS iGenomes S3 resource.
☆116Updated 8 months ago
Alternatives and similar repositories for AWS-iGenomes
Users that are interested in AWS-iGenomes are comparing it to the libraries listed below
Sorting:
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆135Updated 2 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆159Updated last week
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆151Updated 3 weeks ago
- Relevant papers for CNV and SV approaches☆94Updated 9 months ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 4 months ago
- Copy number calling and variant classification using targeted short read sequencing☆138Updated 4 months ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- ☆82Updated 6 years ago
- A small-RNA sequencing analysis pipeline☆89Updated 2 months ago
- Learning the Variant Call Format☆144Updated 3 weeks ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆195Updated 3 weeks ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆125Updated 5 years ago
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated last month
- Software program for checking sample matching for NGS data☆134Updated last year
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- ☆95Updated 2 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Analysis pipeline for the GUIDE-seq assay.☆78Updated 2 years ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated last month
- RNA-Seq analysis workflow☆104Updated 4 years ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆151Updated this week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆162Updated 2 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Updated 5 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 2 months ago