Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine
Genomic Interactive Visualization Engine
☆145Updated 2 years ago
Alternatives and similar repositories for Genomic-Interactive-Visualization-Engine:
Users that are interested in Genomic-Interactive-Visualization-Engine are comparing it to the libraries listed below
- Relevant papers for CNV and SV approaches☆94Updated 5 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆80Updated 3 months ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆129Updated 10 months ago
- ☆120Updated 5 months ago
- Learning the Variant Call Format☆139Updated last year
- FEELnc : FlExible Extraction of LncRNA☆87Updated 7 months ago
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- A tool for bigWig files.☆119Updated 6 years ago
- A small-RNA sequencing analysis pipeline☆83Updated 2 weeks ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 5 months ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated last year
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 12 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- Issue tracker for the Biostar Handbook☆62Updated 2 years ago
- phasing and Allele Specific Expression from RNA-seq☆112Updated 9 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- Documentation and description of AWS iGenomes S3 resource.☆113Updated 4 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 2 months ago
- Check strandedness of RNA-Seq fastq files☆123Updated 2 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆127Updated 3 months ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆92Updated 5 months ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆148Updated 8 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated last week
- Allele-specific alignment sorting☆55Updated 2 years ago