Zhong-Lab-UCSD / Genomic-Interactive-Visualization-EngineLinks
Genomic Interactive Visualization Engine
☆145Updated 2 years ago
Alternatives and similar repositories for Genomic-Interactive-Visualization-Engine
Users that are interested in Genomic-Interactive-Visualization-Engine are comparing it to the libraries listed below
Sorting:
- Learning the Variant Call Format☆144Updated 2 months ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Relevant papers for CNV and SV approaches☆94Updated 11 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 8 months ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- RNA-Seq analysis workflow☆105Updated 4 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆88Updated 11 months ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆150Updated 2 months ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated last week
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆131Updated last year
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- Documentation and description of AWS iGenomes S3 resource.☆116Updated 10 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆138Updated last month
- ☆50Updated 4 years ago
- Galaxy RNA workbench☆40Updated 4 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- Intervene: a tool for intersection and visualization of multiple genomic region and gene sets☆143Updated last year
- ☆89Updated 4 years ago
- Tools for analyzing DNA methylation data☆43Updated last week
- A small-RNA sequencing analysis pipeline☆94Updated 4 months ago
- Next-Generation Sequencing(NGS) toolkits.☆48Updated 9 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 4 years ago
- Materials for Spring 2018 Applied Genomics Course☆79Updated 6 years ago