Genomic Interactive Visualization Engine
☆145Jan 5, 2023Updated 3 years ago
Alternatives and similar repositories for Genomic-Interactive-Visualization-Engine
Users that are interested in Genomic-Interactive-Visualization-Engine are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 7 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 5 years ago
- Publication quality NGS track plotting☆121Oct 10, 2025Updated last year
- Multiple sequence alignment browser☆12Dec 12, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A genome browser designed for complex structural variants and long reads.☆307Aug 19, 2026Updated 2 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆29Apr 22, 2024Updated 2 years ago
- Microassembly based somatic variant caller for NGS data☆153Jun 23, 2022Updated 4 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- Modular Multi-scale Integrated Genome Graph Browser☆100Oct 22, 2026Updated last week
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆32Dec 10, 2022Updated 3 years ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 3 years ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 3 years ago
- Plot structural variant signals from many BAMs and CRAMs☆573Jul 13, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SVG based genome viewer written in javascript using D3☆70Mar 14, 2018Updated 8 years ago
- A phenotype-based tool for variant prioritization in WES and WGS data☆41Nov 21, 2022Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆59Feb 17, 2022Updated 4 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆47Sep 20, 2022Updated 4 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆906Oct 3, 2026Updated 3 weeks ago
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 6 months ago
- Interactive in-browser track viewer☆282Oct 26, 2021Updated 5 years ago
- command-line tools for the management of genotype likelihoods and allele counts☆30Jun 17, 2026Updated 4 months ago
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆737Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- structural variant calling and genotyping with existing tools, but, smoothly.☆268Jun 17, 2024Updated 2 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Dec 15, 2021Updated 4 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Jun 5, 2017Updated 9 years ago
- Unfazed by genomic variant phasing☆29May 26, 2024Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Dec 26, 2023Updated 2 years ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 5 years ago
- ⚔️ Find splicing-led, functional changes of the proteome.☆10Jun 18, 2019Updated 7 years ago
- VIPER (Variant InsPector and Expert Rating tool) can be utilised to view variant calls and decide whether or not those are true or false …☆16Jan 17, 2022Updated 4 years ago
- R interface to the JBrowse 2 Linear Genome View.☆40Oct 10, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- v2.x of the microassembly based somatic variant caller☆29Oct 19, 2026Updated last week
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Jun 29, 2020Updated 6 years ago
- Interval data structure☆235Mar 18, 2026Updated 7 months ago
- HTML5 canvas genomic graphics library☆76May 6, 2019Updated 7 years ago
- New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high perform…☆171Aug 28, 2026Updated 2 months ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 7 months ago