corydunnlab / SequenceBouncerLinks
A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).
☆10Updated last year
Alternatives and similar repositories for SequenceBouncer
Users that are interested in SequenceBouncer are comparing it to the libraries listed below
Sorting:
- Python3 command-line and GUI tools for common codon usage statistics given a FASTA of Coding sequences☆13Updated last month
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆19Updated last year
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆34Updated last year
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Updated 9 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 4 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Updated 3 years ago
- metabolic heatmap☆22Updated 6 years ago
- HMmer Based UndeRstandinG of gene clustERs☆15Updated 8 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Updated 4 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 5 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 months ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated 2 years ago
- ☆24Updated 9 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Updated 2 years ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆63Updated last year
- Pipeline for major biological analyses.☆36Updated 3 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated 2 months ago
- antimicrobial peptide prediction in R☆33Updated last year
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆82Updated 2 months ago
- This is a repository for CAMPER.☆16Updated last year
- ☆31Updated 4 years ago
- rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference☆27Updated 2 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Updated 2 years ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆48Updated last month
- Detection of incorrectly labeled sequences across kingdoms☆88Updated 3 years ago
- ☆19Updated 3 years ago
- The Microbial Co-occurrence Network Explorer☆21Updated 2 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆38Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated last year
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 4 years ago