pharmbio / plaid
PLAID (Plate Layouts using Artificial Intelligence Design) is a flexible constraint-programming model representing the Plate Layout Design problem.
☆13Updated last month
Related projects ⓘ
Alternatives and complementary repositories for plaid
- StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a no…☆32Updated last year
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆19Updated 7 months ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆20Updated 3 months ago
- Protein design and variant prediction using autoregressive generative models☆22Updated last year
- ☆44Updated last year
- Python Client Package for WikiPathways☆15Updated 3 weeks ago
- ☆30Updated 3 years ago
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆27Updated 9 months ago
- TargetDB is a tool to quickly querry multiple publicly available databases and provide an integrated view of the information available ab…☆27Updated 4 months ago
- Python package to manage protein structures and their annotations☆40Updated 8 months ago
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆27Updated last year
- ADOPT: intrinsic protein disorder prediction through deep bidirectional transformers☆16Updated last year
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆49Updated 2 weeks ago
- The molstar plugin for plotly dash framework☆15Updated this week
- bioinformatics tools running on modal☆57Updated this week
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆46Updated 5 months ago
- ☆21Updated 7 months ago
- ☆27Updated 6 months ago
- An (unofficial) Python3 module to query the SmallWorld chemical space search server (https://sw.docking.org/search.html)☆34Updated 9 months ago
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆22Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆47Updated 6 months ago
- Code for our paper "Protein sequence design with a learned potential"☆34Updated 3 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated 6 months ago
- Computational Analysis of Novel Drug Opportunities☆35Updated 3 weeks ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 2 years ago
- Code used in the manuscript for De Novo Design of Bioactive Protein Switches☆15Updated 5 years ago
- Sniffing out new drugs☆21Updated last year
- Learning with uncertainty for biological discovery and design☆33Updated last year
- ☆25Updated last month
- Paratope Prediction using Deep Learning☆59Updated last year