This is a repository for CAMPER.
☆18Mar 18, 2024Updated 2 years ago
Alternatives and similar repositories for CAMPER
Users that are interested in CAMPER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Updated this week
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆14Mar 14, 2024Updated 2 years ago
- Repository for GreeningLab metabolic marker gene databases☆15May 28, 2026Updated 5 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆20Aug 7, 2026Updated 2 months ago
- OxyMetaG: Oxygen metabolism profiling from metagenomic data☆14Aug 8, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Hydrocarbon biodegradation gene annotation☆20Jul 14, 2022Updated 4 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆47Feb 17, 2023Updated 3 years ago
- Improvement of metagenome-assembled genomes☆59Mar 17, 2020Updated 6 years ago
- ☆14Sep 2, 2021Updated 5 years ago
- A tool to assemble high-quality phages from metagenomes.☆28Sep 10, 2026Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆56Jul 3, 2024Updated 2 years ago
- A command-line tool for profiling CAZyme abundances in metagenomic datasets.☆44Updated this week
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆343Updated this week
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Oct 12, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆26Feb 7, 2022Updated 4 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆236Mar 24, 2026Updated 7 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆24May 14, 2023Updated 3 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆73Mar 16, 2026Updated 7 months ago
- An R package to construct Multi-Omics Integration Reproducible Analyses in R.☆14Jun 8, 2026Updated 4 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆34Nov 2, 2025Updated 11 months ago
- ☆65Updated this week
- SemiBin: metagenomics binning with self-supervised deep learning☆175Oct 13, 2026Updated 2 weeks ago
- Pilea: profiling bacterial growth dynamics from metagenomes with sketching☆13Oct 21, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Integrated Network Analysis Pipeline☆19Dec 19, 2024Updated last year
- Benchmark of differential abundance methods on microbiome data☆10Oct 9, 2025Updated last year
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Updated this week
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Oct 14, 2026Updated 2 weeks ago
- ☆21Apr 1, 2025Updated last year
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆26Feb 6, 2026Updated 8 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆84Mar 2, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Course materials for the Genomics Aotearoa Metagenomics Summer School☆67Updated this week
- A Snakemake workflow for recovery of plastid genomes from metagenomic samples☆11Nov 16, 2024Updated last year
- A functional profiler for metagenomes using FracMinHash☆22Apr 20, 2026Updated 6 months ago
- Website / continuous DB builds for SingleM☆12Oct 12, 2026Updated 2 weeks ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆11May 17, 2024Updated 2 years ago
- DAS Tool☆178Oct 9, 2026Updated 3 weeks ago
- Ready-made Taxonomic Weights Repository☆25Mar 31, 2022Updated 4 years ago