Alternatives and similar repositories for macworp

Users that are interested in macworp are comparing it to the libraries listed below

• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆60Updated last week
• viash-io / viash
  script + metadata = standalone component
  ☆43Updated last week
• single-cell-data / SOMA
  A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
  ☆79Updated 2 months ago
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆28Updated 2 years ago
• nf-core / mcmicro
  An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
  ☆21Updated last month
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 8 months ago
• Marsilea-viz / legendkit
  Legend made easy for matplotlib
  ☆30Updated 2 months ago
• kaizhang / anndata-rs
  ☆34Updated last week
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆56Updated 5 years ago
• regulatory-genomics / precellar
  ☆36Updated 3 weeks ago
• nf-core / molkart
  A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
  ☆13Updated last month
• sebriois / biomart
  Python biomart API
  ☆68Updated 2 years ago
• SingleRust / SingleRust
  Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀
  ☆61Updated last month
• ncbi / pm4ngs
  Project Manager for NGS data analysis
  ☆31Updated 3 years ago
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• COMBINE-lab / simpleaf
  A rust framework to make using alevin-fry even simpler
  ☆57Updated 4 months ago
• ggirelli / iFISH-probe-design
  iFISH Probe Design: a Python3 package to build iFISH probes.
  ☆12Updated 3 years ago
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆121Updated 6 months ago
• harryhaller001 / keggtools
  Library for KEGG pathway enrichment analysis
  ☆16Updated 2 months ago
• mikelkou / fava
  Functional Associations using Variational Autoencoders
  ☆40Updated 3 weeks ago
• nf-core / imcyto
  Image Mass Cytometry analysis pipeline
  ☆26Updated 3 months ago
• seqeralabs / wave
  On-demand containers provisioning service
  ☆42Updated last week
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆53Updated last month
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆78Updated 6 months ago
• statbiophys / SONIA
  Infer selection pressures on features of amino acid CDR3 sequences.
  ☆25Updated last year
• nextflow-io / hyperopt
  Nextflow pipeline for hyperparameter optimization of machine learning models
  ☆24Updated last year
• beliveau-lab / OligoMiner
  Genome-scale design tool for oligo hybridization probes
  ☆63Updated 4 years ago
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆57Updated this week
• HumanCellAtlas / sctools
  Utilities for large scale distributed single cell data processing
  ☆24Updated last month
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆37Updated last month