ctokheim / PrimerSeqLinks
Primer Seek in RNA-Seq. Designs RT-PCR primers that validate alternative splicing events from RNA-Seq data.
☆13Updated 8 years ago
Alternatives and similar repositories for PrimerSeq
Users that are interested in PrimerSeq are comparing it to the libraries listed below
Sorting:
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Machine learning use cases for teaching☆13Updated 8 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Updated 13 years ago
- Genomic plot in trellis layout☆41Updated last year
- Comprehensive Human Expressed SequenceS☆18Updated 4 months ago
- mitochondrial variant analysis tools☆15Updated 4 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 10 months ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- Generate HTML report for a set of genomic regions or DESeq2/edgeR results☆10Updated 10 months ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Updated this week
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- ☆10Updated 6 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Updated 7 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last month
- CircRNA testing and ploting R package☆10Updated 5 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 5 months ago
- Targeted and non-targeted anticancer drugs and drug regimens☆29Updated 2 weeks ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 8 months ago
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 7 years ago
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Updated 2 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 6 years ago