CircAST is a computational tool for circular RNA full-length assembly and quantification using RNA-Seq data.
☆10Jun 17, 2021Updated 5 years ago
Alternatives and similar repositories for CircAST
Users that are interested in CircAST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- Full-length linear and circular transcript isoform reconstruction and quantification☆11Jun 17, 2024Updated 2 years ago
- Find circRNAs in RNA-seq data.☆15Jul 5, 2016Updated 10 years ago
- tools to find circRNAs in RNA-seq data☆47Nov 16, 2017Updated 8 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆12Mar 19, 2026Updated 4 months ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- ☆11Aug 3, 2018Updated 7 years ago
- Primer Seek in RNA-Seq. Designs RT-PCR primers that validate alternative splicing events from RNA-Seq data.☆13Nov 27, 2016Updated 9 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆61May 11, 2026Updated 2 months ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- GEO RNA-seq Experiments Processing Pipeline☆22Oct 25, 2019Updated 6 years ago
- circular RNA quantification tools☆31Jun 17, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Aug 4, 2022Updated 3 years ago
- Hi-C data super-resolution with generative adversarial networks☆15Jul 6, 2021Updated 5 years ago
- Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).☆17Jan 17, 2023Updated 3 years ago
- Peak calling for 4C data☆13May 4, 2018Updated 8 years ago
- pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data☆56Dec 11, 2025Updated 7 months ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆27Oct 5, 2015Updated 10 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆48May 13, 2016Updated 10 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆62Jun 1, 2019Updated 7 years ago
- ☆16Jun 3, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python wrapper for MaxEntScan to calculate splice site strength.☆20Jul 12, 2026Updated last week
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- ☆22Aug 11, 2020Updated 5 years ago
- Simple codes and lines to process 3C/Hi-C data☆18Oct 21, 2021Updated 4 years ago
- Script to convert a Garmin FIT file (Versions 1 and 2) to a GPX file suitable for upload to Strava☆10May 12, 2017Updated 9 years ago
- circular RNA analysis toolset☆90Sep 8, 2024Updated last year
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Mar 5, 2012Updated 14 years ago
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)☆17Jul 13, 2018Updated 8 years ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Mar 4, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Time-stratified case-crossover studies for aggregated data in environmental epidemiology: a tutorial☆14Jul 25, 2025Updated 11 months ago
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Apr 16, 2019Updated 7 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆23Jun 28, 2024Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Jul 7, 2018Updated 8 years ago
- MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.☆15Jul 23, 2020Updated 6 years ago
- Analysis of data produced by cvapipe for the variance paper☆24Dec 23, 2024Updated last year