PayamDiba / CIMLA
Counterfactual Inference by Machine Learning and Attribution Models
☆10Updated last year
Alternatives and similar repositories for CIMLA:
Users that are interested in CIMLA are comparing it to the libraries listed below
- ☆38Updated 2 years ago
- A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders☆17Updated 9 months ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆54Updated 9 months ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆13Updated 6 months ago
- ☆12Updated last year
- ☆44Updated 2 years ago
- a variational autoencoder method for clustering single-cell mutation data☆11Updated last year
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆23Updated 3 months ago
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆15Updated last month
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆13Updated 4 months ago
- A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts☆11Updated 2 years ago
- A positive-unlabeled ensemble learning framework for disease gene prioritization.☆16Updated last month
- ☆54Updated last year
- ☆11Updated last year
- ☆43Updated last month
- Multi-omics biomarker discovery tool exploiting a gene-gene interaction network☆17Updated last year
- ☆16Updated 9 months ago
- ☆12Updated 2 years ago
- "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nat…☆14Updated 2 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 3 years ago
- scDrug: From scRNA-seq to Drug Repositioning☆32Updated last year
- ☆29Updated last week
- xOAML - NatComms☆12Updated 9 months ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated 2 years ago
- This is a repo that includes some resources about machine learning and the application in biology. We are students/alumni of Peking Unive…☆15Updated 5 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆26Updated 5 years ago
- A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in single-cell analysis.☆12Updated last week
- A deep generative neural network based approach to impute drug response☆20Updated 3 years ago
- ☆14Updated last year
- A VGAE-based model to infer transcription factor regulatory network☆26Updated 2 years ago