☆10Oct 21, 2019Updated 7 years ago
Alternatives and similar repositories for VarSight
Users that are interested in VarSight are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 10 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- ☆12Apr 18, 2022Updated 4 years ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- A tool kit to manage many variant on desktop computer☆13Jan 13, 2026Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 9 years ago
- Explore and analyze biological sequence data☆19Aug 1, 2024Updated 2 years ago
- Pedigree drawing with ease☆24Feb 10, 2022Updated 4 years ago
- ☆12Aug 8, 2019Updated 7 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Jul 30, 2020Updated 6 years ago
- indel haplotype visualization on the command line from BAM files☆12Mar 12, 2014Updated 12 years ago
- Variant Effect Prediction for Python☆16Apr 5, 2017Updated 9 years ago
- Haplotype phaser for next-generation sequencing data☆14Jan 13, 2022Updated 4 years ago
- Calls somatic SNVs, indels, and allelic copy number jointly across multiple samples from the same patient. These can be standard tumor/n…☆10Oct 29, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 months ago
- A Python library for manipulation of CIGAR, MSA, and other alignment formats.☆12Apr 14, 2026Updated 6 months ago
- ☆16Jan 15, 2025Updated last year
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 9 years ago
- Exposing public genomics data via computable and searchable metadata☆13Jul 9, 2024Updated 2 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆31Sep 3, 2026Updated last month
- ☆13Oct 14, 2017Updated 9 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 3 years ago
- ☆13Oct 13, 2021Updated 5 years ago
- Parallel execution of processes☆12Aug 17, 2025Updated last year
- A tool to genotype CYP2D6 with WGS data☆62Oct 14, 2023Updated 3 years ago
- Extends miniwdl to run workflows on AWS Batch & EFS☆22Feb 5, 2024Updated 2 years ago
- A collection of reusable WDL tasks. Category:Other☆88Sep 29, 2026Updated 3 weeks ago
- ☆12Jun 26, 2026Updated 4 months ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34May 5, 2022Updated 4 years ago
- Shiny ClinVar web server source code☆13Apr 29, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Oct 27, 2021Updated 5 years ago
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated 7 months ago
- ☆24May 1, 2026Updated 5 months ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 8 years ago
- Visualize next generation sequencing reads over putative structural variants☆13Aug 25, 2014Updated 12 years ago
- C++ wrapper to tabix indexer☆18Jun 27, 2025Updated last year
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 5 years ago