Alternatives and similar repositories for bioinformatics-coffee-hour:

Users that are interested in bioinformatics-coffee-hour are comparing it to the libraries listed below

• nextflow-io / training
  Nextflow training material
  ☆155Updated this week
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆339Updated 7 months ago
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆184Updated 2 weeks ago
• igordot / genomics
  A collection of scripts and notes related to genomics and bioinformatics
  ☆207Updated last month
• melbournebioinformatics / MelBioInf_docs
  Melbourne Bioinformatics documentation in markdown format
  ☆110Updated 3 months ago
• griffithlab / rnabio.org
  website for the rnaseq course
  ☆98Updated 3 months ago
• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆309Updated 5 months ago
• CompEpigen / figeno
  Tool for plotting sequencing data along genomic coordinates.
  ☆259Updated last month
• hbctraining / Intro-to-DGE
  ☆192Updated this week
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆166Updated 3 years ago
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆244Updated last month
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆325Updated last month
• snakemake-workflows / dna-seq-gatk-variant-calling
  This Snakemake pipeline implements the GATK best-practices workflow
  ☆250Updated last year
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆145Updated 6 months ago
• Bioconductor / bioconductor-training
  Bioconductor teaching and education committee
  ☆48Updated 3 weeks ago
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆210Updated last week
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆295Updated 3 years ago
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆136Updated 4 years ago
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆215Updated this week
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆394Updated this week
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆400Updated 2 months ago
• fayjustin / computational_biology
  course material
  ☆125Updated 2 years ago
• hbctraining / Intro-to-rnaseq-hpc-salmon-flipped
  Introduction to bulk RNA-seq
  ☆104Updated last month
• Shivi91 / Rosalind-1
  Solutions to Rosalind Bioinformatics Problems
  ☆73Updated 11 years ago
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆171Updated this week
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆119Updated 2 years ago
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆190Updated last year
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆119Updated 4 years ago
• timflutre / trimmomatic
  Read trimming tool for Illumina NGS data.
  ☆131Updated 10 years ago
• vanheeringen-lab / seq2science
  Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…
  ☆156Updated last year