Alternatives and similar repositories for biocode

Users that are interested in biocode are comparing it to the libraries listed below

• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆625Updated this week
• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆778Updated 8 months ago
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆485Updated 4 years ago
• jdidion / biotools
  A list of useful bioinformatics resources
  ☆606Updated last month
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆582Updated 6 months ago
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆722Updated last month
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆819Updated 11 months ago
• tanghaibao / jcvi
  Python library to facilitate genome assembly, annotation, and comparative genomics
  ☆830Updated this week
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆601Updated 10 months ago
• tiagoantao / bioinf-python
  Python for Bioinformatics
  ☆256Updated 4 years ago
• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆843Updated last month
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆416Updated last week
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆339Updated last week
• DerrickWood / kraken2
  The second version of the Kraken taxonomic sequence classification system
  ☆801Updated 2 weeks ago
• mmatschiner / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆386Updated last year
• s-andrews / FastQC
  A quality control analysis tool for high throughput sequencing data
  ☆510Updated last year
• metagenome-atlas / atlas
  ATLAS - Three commands to start analyzing your metagenome data
  ☆392Updated last month
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆527Updated 3 months ago
• tseemann / prokka
  Rapid prokaryotic genome annotation
  ☆906Updated last year
• kblin / ncbi-genome-download
  Scripts to download genomes from the NCBI FTP servers
  ☆1,013Updated 10 months ago
• FelixKrueger / TrimGalore
  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…
  ☆510Updated 3 months ago
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆187Updated last month
• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆1,014Updated 3 years ago
• nf-core / rnaseq
  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
  ☆1,046Updated 2 weeks ago
• Mo7ammedFarahat / BioinformaticsWorkshop-Jan25
  Introduction to Bioinformatics Traning @Medical Ain Shams Research Institute (MASRI) Jan-2025
  ☆11Updated 4 months ago
• usadellab / Trimmomatic
  ☆253Updated last year
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆430Updated 8 years ago
• tseemann / abricate
  Mass screening of contigs for antimicrobial and virulence genes
  ☆421Updated last year
• openbiox / awosome-bioinformatics
  A curated list of resources for learning bioinformatics.
  ☆481Updated 3 years ago
• lindenb / jvarkit
  Java utilities for Bioinformatics
  ☆503Updated last week