jorvis / biocodeLinks
Bioinformatics code libraries and scripts
☆543Updated 2 months ago
Alternatives and similar repositories for biocode
Users that are interested in biocode are comparing it to the libraries listed below
Sorting:
- Phylogenetic orthology inference for comparative genomics☆797Updated 2 months ago
- Fast genome-wide functional annotation through orthology assignment☆658Updated 3 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆858Updated last month
- python module to plot beautiful and highly customizable genome browser tracks☆843Updated last year
- A list of useful bioinformatics resources☆616Updated 5 months ago
- Rapid prokaryotic genome annotation☆934Updated last year
- Scripts to download genomes from the NCBI FTP servers☆1,034Updated 2 months ago
- Bioinformatics one liners from Ming Tang☆495Updated 5 years ago
- Tools to process and analyze deep sequencing data.☆735Updated 2 months ago
- The second version of the Kraken taxonomic sequence classification system☆827Updated last month
- Gene cluster comparison figure generator☆613Updated 10 months ago
- A list of interesting genome browser and genome visualization programs☆1,012Updated 3 weeks ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆872Updated 5 months ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆524Updated last month
- Toolkit for processing sequences in FASTA/Q formats☆1,498Updated 4 months ago
- SPAdes Genome Assembler☆869Updated 3 weeks ago
- A quality control analysis tool for high throughput sequencing data☆537Updated last week
- hybrid assembly pipeline for bacterial genomes☆618Updated last year
- Trinity RNA-Seq de novo transcriptome assembly☆872Updated 7 months ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,109Updated 2 weeks ago
- Incubator for useful bioinformatics code, primarily in Python and R☆633Updated 8 months ago
- A single molecule sequence assembler for genomes large and small.☆691Updated last month
- A complete pipeline for metagenomic analysis☆431Updated last month
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆683Updated 6 months ago
- bedtools - the swiss army knife for genome arithmetic☆999Updated 6 months ago
- The next version of bwa-mem☆784Updated 3 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,360Updated 2 weeks ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆641Updated 2 years ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆531Updated 2 weeks ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆553Updated last month