Bioinformatics code libraries and scripts
☆559Jul 22, 2025Updated 7 months ago
Alternatives and similar repositories for biocode
Users that are interested in biocode are comparing it to the libraries listed below
Sorting:
- Interactive lessons in bioinformatics.☆876Jul 19, 2021Updated 4 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆890Feb 15, 2026Updated 2 weeks ago
- Python for Bioinformatics☆262Oct 1, 2020Updated 5 years ago
- Useful bash one-liners for bioinformatics.☆1,998Sep 9, 2023Updated 2 years ago
- Incubator for useful bioinformatics code, primarily in Python and R☆645Feb 5, 2025Updated last year
- A curated list of awesome Bioinformatics libraries and software.☆3,870Mar 21, 2025Updated 11 months ago
- A list of useful bioinformatics resources☆625Apr 29, 2025Updated 10 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆212Jan 17, 2024Updated 2 years ago
- Eukaryotic Genome Annotation Pipeline☆382Feb 12, 2026Updated 2 weeks ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆79May 20, 2024Updated last year
- Fast genome-wide functional annotation through orthology assignment☆701Jun 18, 2025Updated 8 months ago
- Scripts to download genomes from the NCBI FTP servers☆1,060Jul 28, 2025Updated 7 months ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,520Updated this week
- A pipeline used to identify different modes of duplicated gene pairs☆117Jul 22, 2025Updated 7 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆292Updated this week
- Phylogenetic orthology inference for comparative genomics☆837Jul 15, 2025Updated 7 months ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Sep 5, 2017Updated 8 years ago
- Any Way to Show Multi genomic Synteny☆218Jul 4, 2025Updated 7 months ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆370Feb 13, 2025Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Aug 30, 2016Updated 9 years ago
- Extensive de-novo TE Annotator☆430Oct 12, 2025Updated 4 months ago
- resources for learning bioinformatics☆1,360Jan 8, 2025Updated last year
- Bioinformatics Workbook repository☆205Dec 17, 2025Updated 2 months ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆119Apr 7, 2021Updated 4 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆215Jun 25, 2025Updated 8 months ago
- Java utilities for Bioinformatics☆518Feb 6, 2026Updated 3 weeks ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆561Jan 13, 2026Updated last month
- python module to plot beautiful and highly customizable genome browser tracks☆864Jul 10, 2024Updated last year
- Fast genome analysis from unassembled short reads☆313Apr 8, 2024Updated last year
- ☆78Dec 4, 2019Updated 6 years ago
- Mummer alignment tool☆548Feb 4, 2025Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188May 17, 2024Updated last year
- haplotypic duplication identification tool☆275Oct 30, 2025Updated 4 months ago
- Synteny and Rearrangement Identifier☆448Apr 29, 2025Updated 10 months ago
- An accurate GFF3/GTF lift over pipeline☆530Aug 1, 2023Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Nov 18, 2022Updated 3 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆449Oct 20, 2025Updated 4 months ago
- Version 5 of the CAFE phylogenetics software☆161Feb 12, 2025Updated last year
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆25Feb 22, 2019Updated 7 years ago