CebolaLab / ATAC-seqLinks
Analysis pipeline for ATAC-seq data
☆76Updated last year
Alternatives and similar repositories for ATAC-seq
Users that are interested in ATAC-seq are comparing it to the libraries listed below
Sorting:
- Basic workflow for ATAC-seq analysis☆86Updated last year
- ☆110Updated last year
- CUT&RUN and CUT&Tag data processing and analysis☆111Updated 7 months ago
- A tool for detecting somatic variants in single cell data☆214Updated last year
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆112Updated last week
- ☆95Updated this week
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆68Updated 3 months ago
- Analysis pipeline for ATAC-seq Data☆62Updated 4 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆91Updated 2 years ago
- SNV calling from single cell sequencing☆109Updated 10 months ago
- ☆115Updated last month
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆98Updated 5 years ago
- ☆173Updated 3 weeks ago
- Efficient genotyping bi-allelic SNPs on single cells☆150Updated last year
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- ☆139Updated 6 years ago
- my notes for scATACseq analysis☆132Updated last year
- scATAC-seq data analysis tools and papers☆122Updated 3 months ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆100Updated 2 weeks ago
- scDIOR: Single cell data IO softwaRe☆147Updated 3 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆112Updated last month
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆112Updated 2 years ago
- Haplotype-aware CNV analysis from single-cell RNA-seq☆190Updated 2 weeks ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆227Updated 3 weeks ago
- ☆84Updated last year
- ☆172Updated last year
- Clustering scRNAseq by genotypes☆189Updated 10 months ago
- Single Cell Analysis Pipelines☆107Updated this week
- chromatin Variability Across Regions (of the genome!)☆181Updated last year