CebolaLab / ATAC-seqLinks
Analysis pipeline for ATAC-seq data
☆60Updated last year
Alternatives and similar repositories for ATAC-seq
Users that are interested in ATAC-seq are comparing it to the libraries listed below
Sorting:
- Basic workflow for ATAC-seq analysis☆78Updated last year
- ☆107Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆57Updated 2 months ago
- ☆64Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆90Updated 2 years ago
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆92Updated last month
- SNV calling from single cell sequencing☆100Updated 6 months ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 4 years ago
- Analysis pipeline for ATAC-seq Data☆61Updated 3 years ago
- ☆107Updated 2 months ago
- ☆92Updated 3 weeks ago
- release version☆53Updated 2 years ago
- Tutorial Website☆59Updated 4 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆93Updated 2 years ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆91Updated this week
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆105Updated 2 months ago
- ☆80Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- ☆80Updated 9 months ago
- ☆91Updated last week
- ☆62Updated last year
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆59Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆109Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆57Updated last year
- An elegant package to visualize gene structures☆77Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- ☆67Updated 2 years ago
- ☆139Updated this week