ekg / dozyg
sequence to graph mapper
☆11Updated 3 years ago
Alternatives and similar repositories for dozyg:
Users that are interested in dozyg are comparing it to the libraries listed below
- genome variation graphs constructed from HLA GRCh38 ALTs☆22Updated 3 years ago
- A read alignment visualization library for long reads☆11Updated 2 years ago
- Pangenome Graph Variation Format (PGVF)☆18Updated 4 years ago
- Rust implementation of VG handle graph☆20Updated last year
- Population genetics analysis on VG☆16Updated 3 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Updated 3 years ago
- GBWT in Rust☆42Updated 2 months ago
- Rust bindings to the wavefront algorithm C implementation☆18Updated 2 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- convert variation graph alignments to coverage maps over nodes☆22Updated this week
- ☆14Updated last year
- ☆21Updated 4 months ago
- GFA insert into GenomicSQLite☆48Updated 3 years ago
- the pangenome graph evaluator☆24Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated 9 months ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 5 years ago
- ☆25Updated 3 years ago
- ☆17Updated 4 years ago
- GBWT-based handle graph☆31Updated last week
- De Bruijn graph construction for large k.☆18Updated 3 years ago
- Utilities to detect and profile `het-kmers`☆11Updated 5 months ago
- ☆17Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆23Updated 2 weeks ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- Statistics and analysis for variation graphs☆33Updated last month
- Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map☆10Updated 3 years ago
- ☆15Updated 3 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago