alberto-valdeolivas / ST_CRC_CMSLinks
This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics technology
☆11Updated 2 years ago
Alternatives and similar repositories for ST_CRC_CMS
Users that are interested in ST_CRC_CMS are comparing it to the libraries listed below
Sorting:
- ☆20Updated 3 years ago
- ☆22Updated last year
- Hotspot cluster distance analysis in spatial transcriptomic data☆33Updated 9 months ago
- Integration of gut cell atlases☆30Updated last month
- ☆28Updated last year
- ☆32Updated 9 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆17Updated 3 years ago
- Spatial Transcriptomic Analysis of OSCC samples☆27Updated 2 years ago
- ☆50Updated last month
- ☆49Updated 4 months ago
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆23Updated last year
- ☆13Updated 3 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆79Updated 7 months ago
- <Bioinformatics> scCancer2: data-driven in-depth annotations of the tumor microenvironment at single-level resolution☆27Updated 3 months ago
- ☆14Updated 5 months ago
- ☆14Updated 2 years ago
- ☆29Updated last week
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆29Updated last year
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆129Updated last year
- ☆41Updated 6 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 10 months ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 4 years ago
- ☆22Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated 3 weeks ago
- The current study provides a comprehensive insights into the PDAC metastatic biology.☆22Updated last year
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆26Updated 2 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆52Updated last year
- Gene group activity utility functions for Scanpy☆97Updated 11 months ago