Alternatives and similar repositories for ST_CRC_CMS

Users that are interested in ST_CRC_CMS are comparing it to the libraries listed below

• maximemeylan / Meylan_et_al_2022
  ☆19Updated 3 years ago
• PansccSpat / SpatialMapESCC
  ☆17Updated 8 months ago
• ThomasJamesMitchell / deSCeRNAMut
  Method for de novo mutation calling from droplet based single cell RNA seq data
  ☆14Updated 3 years ago
• lhuang1 / Th17_single_cell
  ☆12Updated 3 years ago
• kaifuchenlab / MEBOCOST
  ☆25Updated last week
• secrierlab / SpottedPy
  Hotspot cluster distance analysis in spatial transcriptomic data
  ☆29Updated 5 months ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 2 years ago
• bsungwoo / spSeudoMap
  spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data
  ☆13Updated 9 months ago
• Patchouli-M / SequencingCancerFinder
  ☆35Updated last month
• strangephone / EENT-ONB
  scRNA-seq analysis of EENT-ONB
  ☆22Updated last year
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆27Updated 5 months ago
• czythu / scCancer
  scCancer2: data-driven in-depth annotations of the tumor microenvironment at single-level resolution
  ☆27Updated 6 months ago
• marcalva / hcc_sc_2022
  HCC single cell analysis for Alvarez, Benhammou et al.
  ☆17Updated 3 years ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆53Updated last month
• Junjie-Hu / NSCLC-immunotherapy
  ☆24Updated last year
• Miaoyx323 / stCancer
  ☆22Updated 8 months ago
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆74Updated 2 years ago
• rohitarorayyc / SpatialTranscriptomics
  Spatial Transcriptomic Analysis of OSCC samples
  ☆25Updated 2 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆25Updated 10 months ago
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated last year
• Teichlab / HCA_Heart_ver2
  ☆37Updated 2 years ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆30Updated 4 months ago
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆67Updated 2 years ago
• dchary / ucdeconvolve
  UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data
  ☆26Updated last year
• SBIlab / NetBio
  ☆34Updated 3 years ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆64Updated 5 months ago
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆39Updated 3 years ago
• TencentAILabHealthcare / spatialID
  ☆39Updated 2 years ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 2 years ago