chensong611 / SNARE_prep
dropseq-based single nuclei genomic accessibility and RNA expression (SNARE-seq) preprocessing pipeline
☆9Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for SNARE_prep
- Toolkit for single-cell analysis of chromatin accessibility☆12Updated 4 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆10Updated 5 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- ☆40Updated 3 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆11Updated 5 years ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 11 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆15Updated 2 years ago
- ☆16Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 2 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- ☆12Updated 3 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- The million-scale method for single-cell analysis☆10Updated last year
- ☆15Updated 5 months ago
- Single-cell Orientation Tracing☆21Updated 2 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 5 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 7 months ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Updated 4 months ago
- Ordering gene-expression and functional events in single-cell experiments☆18Updated 8 months ago
- Paired-seq☆14Updated 4 months ago
- ☆11Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 5 years ago