DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing
☆32Jun 9, 2017Updated 9 years ago
Alternatives and similar repositories for deepmetabolism
Users that are interested in deepmetabolism are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cameo - computer aided metabolic engineering & optimization☆127Nov 7, 2022Updated 3 years ago
- novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection☆11Apr 28, 2025Updated last year
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 7 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Feb 21, 2020Updated 6 years ago
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Jul 29, 2026Updated 2 weeks ago
- ☆32Sep 28, 2019Updated 6 years ago
- BRENDA parser in python☆23May 16, 2022Updated 4 years ago
- Analysis of ensembles of metabolic network reconstructions☆22May 20, 2026Updated 2 months ago
- A flux balance analysis machine learning classifier for microbial GWAS☆14Jan 14, 2020Updated 6 years ago
- ☆20Jun 20, 2022Updated 4 years ago
- ☆19Sep 20, 2020Updated 5 years ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆25Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.☆14Oct 21, 2022Updated 3 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆131Jul 18, 2026Updated last month
- framed: a metabolic modeling package for python☆26Nov 7, 2019Updated 6 years ago
- R package for CRAG☆12Feb 17, 2025Updated last year
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- COBRApy is a package for constraint-based modeling of metabolic networks.☆579Updated this week
- scripts to parse IrysView output☆11Jun 24, 2015Updated 11 years ago
- An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader dat…☆10Updated this week
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Repository of tutorials for The COBRA Toolbox☆25Apr 27, 2026Updated 3 months ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- CarveMe: genome-scale metabolic model reconstruction☆216Sep 12, 2025Updated 11 months ago
- Analysis tools for longevity research☆23Jul 23, 2017Updated 9 years ago
- An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al☆26Jul 15, 2024Updated 2 years ago
- Modular cloning simulation with the MoClo framework in Python☆11May 3, 2022Updated 4 years ago
- An open-source, Web-based computer aided design (CAD) tool for synthetic biology built on the SBOL standard☆16Dec 22, 2022Updated 3 years ago
- Deep learning for gene expression inference☆148Feb 18, 2019Updated 7 years ago
- ☆12Nov 15, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code to generate Figure 2 of the paper "Predicting age from the transcriptome of human dermal fibroblasts" from the FPKM tables☆25Jul 9, 2021Updated 5 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆25Apr 10, 2019Updated 7 years ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Oct 29, 2019Updated 6 years ago
- ☆11Apr 1, 2024Updated 2 years ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆33Mar 5, 2019Updated 7 years ago
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Feb 13, 2017Updated 9 years ago
- A support vector machine for calling variants from next-gen sequencing data☆15Dec 12, 2013Updated 12 years ago