DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing
☆32Jun 9, 2017Updated 8 years ago
Alternatives and similar repositories for deepmetabolism
Users that are interested in deepmetabolism are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cameo - computer aided metabolic engineering & optimization☆124Nov 7, 2022Updated 3 years ago
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 6 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Sep 16, 2020Updated 5 years ago
- ☆11Feb 21, 2020Updated 6 years ago
- A container for all enzyme constrained models created by GECKO.☆17Jul 4, 2022Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Jan 11, 2019Updated 7 years ago
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Mar 4, 2026Updated 2 months ago
- ☆32Sep 28, 2019Updated 6 years ago
- This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.☆14Oct 21, 2022Updated 3 years ago
- ☆19Sep 20, 2020Updated 5 years ago
- framed: a metabolic modeling package for python☆26Nov 7, 2019Updated 6 years ago
- A flux balance analysis machine learning classifier for microbial GWAS☆14Jan 14, 2020Updated 6 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- scripts to parse IrysView output☆11Jun 24, 2015Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- COBRApy is a package for constraint-based modeling of metabolic networks.☆562Apr 8, 2026Updated last month
- Genome-scale metabolic model of Methylococcus capsulatus.☆12Apr 12, 2019Updated 7 years ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- CarveMe: genome-scale metabolic model reconstruction☆207Sep 12, 2025Updated 8 months ago
- An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al☆25Jul 15, 2024Updated last year
- ☆12Nov 15, 2018Updated 7 years ago
- Machine learning tools for Chemistry☆10Jan 5, 2018Updated 8 years ago
- Deep learning for gene expression inference☆146Feb 18, 2019Updated 7 years ago
- Code to generate Figure 2 of the paper "Predicting age from the transcriptome of human dermal fibroblasts" from the FPKM tables☆24Jul 9, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader dat…☆10Apr 22, 2026Updated last month
- ☆11Apr 1, 2024Updated 2 years ago
- An open-source, Web-based computer aided design (CAD) tool for synthetic biology built on the SBOL standard☆16Dec 22, 2022Updated 3 years ago
- Analysis tools for longevity research☆22Jul 23, 2017Updated 8 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆25Apr 10, 2019Updated 7 years ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆31Mar 5, 2019Updated 7 years ago
- ☆21Mar 20, 2017Updated 9 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆64Feb 15, 2021Updated 5 years ago
- Build-A-Cell protocol for making liposomes☆13Jan 30, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Software tool for metabolic modelling in Systems Biology☆10Dec 30, 2020Updated 5 years ago
- Protein orthologous group assignment with deep learning☆30Dec 16, 2025Updated 5 months ago
- The gview wiki migrated to GitHub.☆11Sep 3, 2020Updated 5 years ago
- Zeobuilder is an extensible GUI-toolkit for molecular model construction.☆13Feb 15, 2019Updated 7 years ago
- Public repository for building and analyzing protein complex maps☆12Dec 6, 2016Updated 9 years ago
- Python package to study microbial communities using metabolic modeling.☆128Mar 31, 2026Updated last month
- Low-rank Highway Networks☆13Mar 11, 2016Updated 10 years ago