amaurypm / pseqsid
Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
☆14Updated last year
Alternatives and similar repositories for pseqsid:
Users that are interested in pseqsid are comparing it to the libraries listed below
- Python framework for doing ancestral sequence reconstruction☆38Updated 9 months ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆19Updated last year
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- Discovery of conserved gene clusters in multiple genomes☆79Updated last month
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆35Updated 8 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 3 weeks ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated last week
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆20Updated 10 months ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Code for LazyAF pipeline☆20Updated last year
- Protein Sequence Annotation with Language Models☆20Updated 6 months ago
- Evolutionary conservation estimation of residues or nucleotides☆41Updated 3 years ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆20Updated last month
- CLANS_2 is a Python-based program for clustering sequences in the 2D or 3D space, based on their sequence similarities. CLANS visualizes …☆18Updated 5 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆23Updated 2 years ago
- A python framework for microbial natural products data mining by integrating genomics and metabolomics data☆18Updated 3 weeks ago
- Open source short linear motif discovery and sequence analysis☆24Updated 7 months ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆55Updated 3 weeks ago
- ☆7Updated 7 months ago
- Desktop application for colouring/shading sequence alignments☆26Updated 2 years ago
- Software for predicting translation initiation rates in bacteria☆22Updated 5 months ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆31Updated 2 months ago
- Fast protein domain structure embedding+search tool☆18Updated last month
- Conservation analysis of homologous proteins with Python☆10Updated 3 years ago
- Protein structure alignment and search algorithm☆59Updated last month
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆14Updated 4 months ago
- ☆16Updated last month
- ☆19Updated 3 years ago
- Transmembrane proteins predicted through Language Model embeddings☆35Updated 3 months ago