amaurypm / pseqsidLinks
Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
☆17Updated last year
Alternatives and similar repositories for pseqsid
Users that are interested in pseqsid are comparing it to the libraries listed below
Sorting:
- Generation and update of protein families☆18Updated 3 weeks ago
- Protein Sequence Annotation with Language Models☆23Updated 2 months ago
- Protein structure alignment and search algorithm☆69Updated last week
- Software for predicting translation initiation rates in bacteria☆29Updated 3 weeks ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated last week
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆30Updated last year
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated 2 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆21Updated 3 months ago
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆17Updated 5 months ago
- A python framework for microbial natural products data mining by integrating genomics and metabolomics data☆21Updated last month
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 months ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆20Updated last year
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆28Updated 4 months ago
- antimicrobial peptide prediction in R☆33Updated 8 months ago
- Virus Protein Structural Analysis Toolkit☆12Updated 11 months ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆14Updated this week
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Updated 7 months ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated last week
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Updated 2 years ago
- ☆16Updated 5 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆56Updated 5 months ago
- Python framework for doing ancestral sequence reconstruction☆41Updated last year
- MicrobeRX☆11Updated 2 weeks ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆21Updated 5 months ago
- ☆20Updated 4 years ago
- Discovery of conserved gene clusters in multiple genomes☆83Updated 3 months ago