amaurypm / pseqsidLinks
Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
☆17Updated last year
Alternatives and similar repositories for pseqsid
Users that are interested in pseqsid are comparing it to the libraries listed below
Sorting:
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆30Updated last year
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated last month
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated 2 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆16Updated 5 months ago
- Protein Sequence Annotation with Language Models☆23Updated 2 months ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆20Updated last year
- Software for predicting translation initiation rates in bacteria☆29Updated last week
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆21Updated 3 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 3 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 months ago
- Protein structure alignment and search algorithm☆65Updated last week
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Updated 2 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated this week
- Ancestral Sequence Reconstruction in Python☆14Updated 6 years ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆21Updated 4 months ago
- FASSO: Functional Annotations using Sequence and Structure Orthology☆9Updated 2 years ago
- Virus Protein Structural Analysis Toolkit☆11Updated 10 months ago
- antimicrobial peptide prediction in R☆33Updated 7 months ago
- Python framework for doing ancestral sequence reconstruction☆39Updated last year
- ☆31Updated 3 years ago
- ☆16Updated 4 months ago
- Generation and update of protein families☆14Updated this week
- Nanopore UMI-linked consensus sequencing☆16Updated 4 years ago
- MicrobeRX☆11Updated 4 months ago
- A python framework for microbial natural products data mining by integrating genomics and metabolomics data☆20Updated 3 weeks ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆70Updated last month
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago