PombertLab / 3DFILinks
The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
☆20Updated last year
Alternatives and similar repositories for 3DFI
Users that are interested in 3DFI are comparing it to the libraries listed below
Sorting:
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆18Updated 2 years ago
- Python framework for doing ancestral sequence reconstruction☆43Updated last year
- Code for LazyAF pipeline☆23Updated last year
- DeepECtransformer☆29Updated 2 years ago
- A predictor of enzyme optimal temperature☆11Updated 10 months ago
- Protein Sequence Annotation with Language Models☆27Updated 2 weeks ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 3 years ago
- Fast protein domain structure embedding+search tool☆27Updated 4 months ago
- Virus Protein Structural Analysis Toolkit☆14Updated last year
- Modeling whole bacterial genome as a sequence of proteins.☆85Updated 2 weeks ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆24Updated 9 months ago
- High throughput tool for tall and wide multiple sequence alignment.☆26Updated last month
- Graphical Representation of Ancestral Sequence Predictions☆12Updated 2 years ago
- Nanopore UMI-linked consensus sequencing☆16Updated 4 years ago
- Python Implementation of Codon Adaption Index☆37Updated 3 years ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆58Updated 9 months ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆33Updated last month
- Generation and updating of protein families☆22Updated last week
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆37Updated last month
- Prediction of virus-host association using protein language models and multiple instance learning☆21Updated last year
- Attentive deep learning model for antimicrobial peptide prediction☆55Updated 10 months ago
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago
- ☆30Updated 2 years ago
- Ancestral Sequence Reconstruction in Python☆14Updated 6 years ago
- A package for making tree-based visualizations for embedding vectors☆10Updated 3 years ago
- antimicrobial peptide prediction in R☆33Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆17Updated 2 years ago
- Protein structure alignment and search algorithm☆79Updated 2 weeks ago
- Conservation analysis of homologous proteins with Python☆13Updated 4 years ago