harmslab / gpmapLinks
A Python API for managing genotype-phenotype map data
☆12Updated 2 years ago
Alternatives and similar repositories for gpmap
Users that are interested in gpmap are comparing it to the libraries listed below
Sorting:
- Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations☆11Updated 2 years ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆17Updated last year
- antimicrobial peptide prediction in R☆33Updated 8 months ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆20Updated last year
- Protein Sequence Annotation with Language Models☆23Updated 3 months ago
- DeepECtransformer☆26Updated last year
- Comprehensive Python client for the Uniprot REST API☆51Updated 2 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 6 years ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆35Updated 4 months ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆27Updated 7 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- A method to predict DNA shape features considering farther flanking region.☆35Updated 11 months ago
- Python framework for doing ancestral sequence reconstruction☆41Updated last year
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated last week
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …☆17Updated 2 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆30Updated 2 years ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated 2 months ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆48Updated last month
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆21Updated 3 months ago
- software for the analysis and visualization of deep mutational scanning data☆34Updated 2 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- Map genetic variants and protein positions to protein interfaces in 3D☆13Updated last year
- Deep learning embedding for nucleotide sequences☆19Updated 5 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- Virus Protein Structural Analysis Toolkit☆12Updated 11 months ago
- Python package and command line tool for epitope prediction☆52Updated last year
- Generated color schemes for sequence alignment visualizations☆18Updated 3 years ago