Alternatives and similar repositories for gpmap:

Users that are interested in gpmap are comparing it to the libraries listed below

• harmslab / epistasis
  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
  ☆34Updated last year
• esbgkannan / chumby
  A package for making tree-based visualizations for embedding vectors
  ☆9Updated 2 years ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆19Updated 5 months ago
• lasersonlab / pepsyn
  Peptide library design
  ☆23Updated 4 years ago
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆19Updated last year
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• cbcrg / msa-af2-nf
  Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models
  ☆12Updated 2 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆29Updated last year
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆35Updated 3 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆26Updated 2 months ago
• ibivu / PRALINE
  Next-generation PRALINE sequence alignment program.
  ☆9Updated 6 years ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• fjossinet / RNA-Science-Toolbox
  A platform to do RNA science
  ☆27Updated 4 years ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆16Updated 2 weeks ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 5 years ago
• fhlab / UMIC-seq
  Nanopore UMI-linked consensus sequencing
  ☆14Updated 4 years ago
• wilkelab / ProteinEvolutionToolbox
  ☆14Updated 9 years ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆24Updated last year
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆39Updated 3 years ago
• konstin / knn-for-homology
  Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"
  ☆12Updated 2 years ago
• Zsailer / pyasr
  Ancestral Sequence Reconstruction in Python
  ☆13Updated 5 years ago
• NPLinker / nplinker
  A python framework for microbial natural products data mining by integrating genomics and metabolomics data
  ☆18Updated this week
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆20Updated 9 months ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• slimsuite / SLiMSuite
  Open source short linear motif discovery and sequence analysis
  ☆24Updated 7 months ago
• tlawrence3 / amPEPpy
  ☆24Updated last year
• hawkjo / freebarcodes
  FREE Divergence Error-Correcting DNA Barcodes
  ☆27Updated 2 months ago
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆31Updated last month
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆39Updated 9 months ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆51Updated 8 months ago