harmslab / gpmapLinks
A Python API for managing genotype-phenotype map data
☆12Updated last year
Alternatives and similar repositories for gpmap
Users that are interested in gpmap are comparing it to the libraries listed below
Sorting:
- Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations☆11Updated 2 years ago
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆17Updated last year
- A method to predict DNA shape features considering farther flanking region.☆33Updated 10 months ago
- Python framework for doing ancestral sequence reconstruction☆39Updated last year
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆30Updated 2 years ago
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 4 years ago
- Next-generation PRALINE sequence alignment program.☆10Updated 6 years ago
- Protein Sequence Annotation with Language Models☆23Updated 2 months ago
- DeepECtransformer☆26Updated last year
- Virus Protein Structural Analysis Toolkit☆11Updated 11 months ago
- The tRNA adaptation index☆18Updated 3 months ago
- Code for LazyAF pipeline☆20Updated last year
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆20Updated last year
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆33Updated 3 months ago
- software for the analysis and visualization of deep mutational scanning data☆35Updated 2 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 2 years ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆21Updated 3 months ago
- Fast protein domain structure embedding+search tool☆25Updated 2 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 6 years ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆35Updated last year
- Detects hotspot regions for somatic mutations in 3D protein structures☆3Updated last year
- A command line tool for rapid visualisation of AlphaFold2 and AlphaFold3 predictions.☆13Updated last month
- Comprehensive Python client for the Uniprot REST API☆50Updated last month
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- Python package and command line tool for epitope prediction☆51Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆46Updated 3 years ago
- antimicrobial peptide prediction in R☆33Updated 7 months ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆48Updated last week