Alternatives and similar repositories for gpmap

Users that are interested in gpmap are comparing it to the libraries listed below

• wuaipinglab / sitePath
  Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations
  ☆11Updated 3 months ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆29Updated 2 years ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆25Updated 2 weeks ago
• amaurypm / pseqsid
  Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
  ☆18Updated last year
• Zsailer / pyasr
  Ancestral Sequence Reconstruction in Python
  ☆14Updated 6 years ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• Legana / ampir
  antimicrobial peptide prediction in R
  ☆33Updated last year
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆30Updated 11 months ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆27Updated 3 months ago
• bcgsc / ntEmbd
  Deep learning embedding for nucleotide sequences
  ☆19Updated 9 months ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆42Updated last year
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago
• jnoms / vpSAT
  Virus Protein Structural Analysis Toolkit
  ☆14Updated last year
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆17Updated last year
• JinsenLi / deepDNAshape
  A method to predict DNA shape features considering farther flanking region.
  ☆38Updated last year
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆22Updated 7 months ago
• tlawrence3 / amPEPpy
  ☆29Updated last year
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆20Updated last year
• bodenlab / GRASP
  Graphical Representation of Ancestral Sequence Predictions
  ☆12Updated 2 years ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆37Updated 3 weeks ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆54Updated 2 months ago
• Merck / bgc-pipeline
  ☆12Updated last year
• cbcrg / msa-af2-nf
  Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models
  ☆12Updated 3 years ago
• esbgkannan / chumby
  A package for making tree-based visualizations for embedding vectors
  ☆10Updated 2 years ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆62Updated 5 years ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆19Updated 6 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• minmarg / comer2
  Fast, sensitive and accurate protein remote homology search on GPUs
  ☆16Updated last year
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆34Updated 3 years ago