Alternatives and similar repositories for cell2sentence

Users that are interested in cell2sentence are comparing it to the libraries listed below

• suinleelab / contrastiveVI
  ☆55Updated last year
• theislab / scTab
  ☆59Updated 10 months ago
• QuKunLab / MultiomeBenchmarking
  ☆49Updated 4 months ago
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆71Updated last month
• TencentAILabHealthcare / scTranslator
  ☆36Updated last month
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆49Updated 5 months ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆44Updated 10 months ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆63Updated 9 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆50Updated 3 years ago
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆58Updated 8 months ago
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 2 years ago
• nitzanlab / biolord
  ☆80Updated 11 months ago
• Genentech / pascient
  ☆16Updated 2 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆84Updated 2 weeks ago
• vandijklab / CINEMA-OT
  ☆32Updated 3 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆129Updated 4 months ago
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆57Updated 6 months ago
• cantinilab / scPRINT
  single cell foundation model for Gene network inference and more
  ☆90Updated 2 weeks ago
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆31Updated 2 years ago
• QSong-github / scGCN
  scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
  ☆40Updated 2 years ago
• bm2-lab / scMVP
  ☆31Updated 3 months ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆26Updated 3 weeks ago
• kimmo1019 / scDEC
  Simultaneous deep generative modeling and clustering of single cell genomic data
  ☆32Updated 2 years ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆67Updated 2 years ago
• snap-stanford / SATURN
  ☆131Updated last year
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆63Updated last week
• czi-ai / scGenePT
  ☆18Updated 5 months ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆68Updated this week
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆54Updated 11 months ago
• theislab / prophet
  ☆34Updated 2 months ago