Alternatives and similar repositories for cell2sentence

Users that are interested in cell2sentence are comparing it to the libraries listed below

• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆51Updated 2 months ago
• vandijklab / CINEMA-OT
  ☆34Updated 5 months ago
• suinleelab / contrastiveVI
  ☆56Updated last year
• const-ae / linear_perturbation_prediction-Paper
  ☆54Updated 2 months ago
• theislab / scTab
  ☆61Updated last year
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 3 years ago
• nitzanlab / biolord
  ☆84Updated last year
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆62Updated this week
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆63Updated 11 months ago
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆61Updated 2 weeks ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆93Updated 2 months ago
• snap-stanford / SATURN
  ☆139Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆67Updated 2 years ago
• QuKunLab / MultiomeBenchmarking
  ☆49Updated 7 months ago
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆108Updated this week
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆112Updated last year
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆51Updated last week
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆104Updated last week
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 3 years ago
• QSong-github / scGCN
  scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
  ☆41Updated 3 years ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆148Updated 7 months ago
• TencentAILabHealthcare / scTranslator
  ☆37Updated last month
• theislab / prophet
  ☆35Updated 2 weeks ago
• bm2-lab / scMVP
  ☆33Updated 5 months ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆70Updated 2 years ago
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆60Updated last year
• BGIResearch / BioLLM
  ☆27Updated 5 months ago
• Genentech / pascient
  ☆18Updated 5 months ago
• nceglia / genevector
  Vector representations of gene co-expression in single cell RNAseq.
  ☆36Updated 4 months ago