Alternatives and similar repositories for CancerFoundation

Users that are interested in CancerFoundation are comparing it to the libraries listed below

• const-ae / linear_perturbation_prediction-Paper
  ☆58Updated 4 months ago
• nitzanlab / biolord
  ☆86Updated last year
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆122Updated 7 months ago
• siyuh / Squidiff
  ☆63Updated last week
• theislab / prophet
  ☆38Updated 2 weeks ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆51Updated 3 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 3 years ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆53Updated 4 months ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆29Updated 3 months ago
• suinleelab / contrastiveVI
  ☆56Updated last year
• romain-lopez / DestVI-reproducibility
  Reproducing the experiments of the DestVI paper
  ☆21Updated 3 years ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆73Updated last year
• mlbio-epfl / systema
  ☆40Updated 4 months ago
• theislab / multicpa
  ☆15Updated 3 years ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆118Updated last year
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆167Updated 3 years ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆56Updated this week
• portrai-io / CELLama
  CELLama Project
  ☆19Updated 3 months ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆96Updated last week
• altoslabs / perturbench
  ☆56Updated last month
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆152Updated 8 months ago
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆119Updated this week
• bm2-lab / STAMP
  ☆14Updated 5 months ago
• theislab / scTab
  ☆61Updated last year
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• uhlerlab / cross-modal-autoencoders
  ☆56Updated 3 years ago
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆63Updated 2 weeks ago
• TencentAILabHealthcare / scTranslator
  ☆52Updated 2 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆95Updated 2 weeks ago
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 3 years ago