CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer
☆29Sep 12, 2025Updated 5 months ago
Alternatives and similar repositories for CancerFoundation
Users that are interested in CancerFoundation are comparing it to the libraries listed below
Sorting:
- CLUMPS adapted to post-translational modifications.☆10May 22, 2025Updated 9 months ago
- Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data☆39Jul 31, 2025Updated 6 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆36Jul 29, 2025Updated 7 months ago
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated 4 months ago
- Gain biological insights using LLM.☆16Jan 26, 2026Updated last month
- [IJMS 2022] DRPreter: Interpretable Anticancer Drug Response Prediction Using Knowledge-Guided Graph Neural Networks and Transformer☆13Nov 30, 2022Updated 3 years ago
- ☆19Apr 30, 2025Updated 10 months ago
- ☆17Oct 3, 2023Updated 2 years ago
- ☆15Jun 13, 2023Updated 2 years ago
- ☆17Jul 8, 2024Updated last year
- ☆23Jan 10, 2025Updated last year
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- Synthetic whole-slide imaging tile generation with gene expression profiles infused deep generative models - Cell Reports Methods☆19Sep 19, 2025Updated 5 months ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆22Oct 8, 2025Updated 4 months ago
- Deep learning tools for peptide substrate prediction and generation☆37Nov 20, 2025Updated 3 months ago
- Diffusion model for gene regulatory network inference.☆26Feb 21, 2026Updated last week
- ☆26May 14, 2025Updated 9 months ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆25Jan 25, 2022Updated 4 years ago
- A deep-learning framework for multi-omics integration☆32Jul 6, 2023Updated 2 years ago
- ☆27Jun 5, 2025Updated 8 months ago
- ☆56Oct 29, 2022Updated 3 years ago
- GraphCDR: A graph neural network method with contrastive learning for cancer drug response prediction☆31Sep 27, 2021Updated 4 years ago
- ☆36Dec 7, 2025Updated 2 months ago
- Providing interactions between drugs and genes sourced from a variety of publications and knowledgebases☆36Jan 13, 2026Updated last month
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆33Mar 13, 2025Updated 11 months ago
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆28Jan 21, 2024Updated 2 years ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆32Aug 13, 2024Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆86Updated this week
- spatial transcriptome, single cell☆73Mar 18, 2023Updated 2 years ago
- Expert-level AI radiology report evaluator☆36Apr 1, 2025Updated 10 months ago
- SAM-Med3D: An Efficient 3D Model for Promptable Volumetric Medical Image Segmentation☆40Nov 24, 2023Updated 2 years ago
- ☆31Nov 15, 2022Updated 3 years ago
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆10Jan 25, 2026Updated last month
- Code for WHO Global Tuberculosis Report 2023☆14Jan 8, 2024Updated 2 years ago
- repository containing analysis scripts and auxiliary files☆37Apr 9, 2020Updated 5 years ago
- ☆10Aug 5, 2021Updated 4 years ago
- Course materials for the Advanced Courses Working With Pathogen Genomes course run virtually in Asia 10-14 May 2021☆10Jul 5, 2024Updated last year
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆10Updated this week
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago