Alternatives and similar repositories for CancerFoundation

Users that are interested in CancerFoundation are comparing it to the libraries listed below

• const-ae / linear_perturbation_prediction-Paper
  ☆56Updated 3 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆96Updated 7 months ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆116Updated last year
• nitzanlab / biolord
  ☆85Updated last year
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆49Updated 3 months ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆27Updated 3 months ago
• theislab / prophet
  ☆35Updated last month
• theislab / scTab
  ☆61Updated last year
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆91Updated last week
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆71Updated 2 years ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆51Updated 2 months ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆167Updated 3 years ago
• altoslabs / perturbench
  ☆43Updated 2 weeks ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 3 years ago
• mlbio-epfl / systema
  ☆38Updated 3 months ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• suinleelab / contrastiveVI
  ☆56Updated last year
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆151Updated 8 months ago
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆114Updated this week
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆62Updated 2 weeks ago
• czi-ai / transcriptformer
  ☆87Updated 2 months ago
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆55Updated 2 years ago
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆27Updated last year
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆36Updated 5 years ago
• portrai-io / CELLama
  CELLama Project
  ☆18Updated 2 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆94Updated 2 months ago
• romain-lopez / DestVI-reproducibility
  Reproducing the experiments of the DestVI paper
  ☆20Updated 3 years ago
• bowang-lab / scGPT-spatial
  ☆112Updated 8 months ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆57Updated last year
• TencentAILabHealthcare / scTranslator
  ☆37Updated 2 months ago