Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
☆32Nov 7, 2024Updated last year
Alternatives and similar repositories for iModulonMiner
Users that are interested in iModulonMiner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆18Feb 29, 2024Updated 2 years ago
- A constraint-based method for prediction of metabolic engineering targets using ecModels of metabolism☆15Feb 12, 2025Updated last year
- Deep learning based prediction of temperature dependent enzyme turnover rates☆18Nov 24, 2024Updated last year
- ☆11Oct 21, 2023Updated 2 years ago
- Symbolic Kinetic Models with Python☆38Jun 4, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- Deep conditional autoregressive models for genome editing sequence-to-sequence problems☆10Jun 29, 2021Updated 5 years ago
- GPro: a toolbox for Generative approaches in promoter design☆30Mar 8, 2024Updated 2 years ago
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 4 years ago
- Some shell scripts related to Thermo Fisher raw format conversion using msconvert☆15Feb 10, 2026Updated 6 months ago
- CGView.js creates interactive circular and linear genome maps.☆48Updated this week
- Whole cell model of E. coli implemented with Vivarium☆32Updated this week
- PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion☆13Jul 4, 2024Updated 2 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆53Aug 23, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Software for predicting translation initiation rates in bacteria☆34Jul 30, 2025Updated last year
- ☆12Dec 4, 2023Updated 2 years ago
- Phylotype your strains using Clermont's 2013 method: ezclermont.org☆18May 5, 2026Updated 3 months ago
- Machine Learning models for in vitro enzyme kinetic parameter prediction☆96Jun 15, 2026Updated 2 months ago
- Models, design algorithms, and other software related to Salis lab publications☆38Aug 5, 2026Updated 3 weeks ago
- Some examples to analyze mass spectrometry data using MALDIquant☆17Oct 13, 2022Updated 3 years ago
- Learning Neural Differential Algebraic Equations via Operator Splitting☆21Jul 24, 2025Updated last year
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆17May 16, 2023Updated 3 years ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆45Apr 27, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆27Sep 21, 2023Updated 2 years ago
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Oct 21, 2022Updated 3 years ago
- ☆16Dec 10, 2024Updated last year
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆16Dec 18, 2025Updated 8 months ago
- ☆35Aug 15, 2026Updated 2 weeks ago
- Framework for multi-omics data integration by autoencoders☆32Jan 20, 2026Updated 7 months ago
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Jul 25, 2016Updated 10 years ago
- Genome scale metabolic models in SBML format☆11Nov 16, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Updated this week
- A simulation engine for compartmental models☆17Updated this week
- REconstruction of dyNAmIc models through Stratified Sampling using Artificial Neural networks and Concepts of Evolution strategies☆19Feb 13, 2026Updated 6 months ago
- For computational analysis of bacterial RNA-seq data☆12Jul 14, 2017Updated 9 years ago
- Project Manager for NGS data analysis☆31Jul 10, 2026Updated last month
- ☆18Jul 15, 2021Updated 5 years ago
- A Python package for "classic" Constraint-Based Reconstruction and Analysis (COBRA) and the new COBRA with kinetics (COBRA-k). Link to do…☆21Jul 16, 2026Updated last month