SBRG / iModulonMiner
Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
☆11Updated 4 months ago
Alternatives and similar repositories for iModulonMiner:
Users that are interested in iModulonMiner are comparing it to the libraries listed below
- Protein Alignment and Detection Interface☆61Updated 11 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆26Updated 3 weeks ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆47Updated last month
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆41Updated 3 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆44Updated 7 months ago
- Pipeline for major biological analyses.☆34Updated 3 years ago
- Metagenome analysis using the Kraken software suite☆31Updated 2 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆33Updated 3 weeks ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆13Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- metabolic heatmap☆20Updated 5 years ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆18Updated last month
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- ☆27Updated 3 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- ☆10Updated 2 weeks ago
- Convert genbank files to a swath of other formats☆16Updated last year
- ☆31Updated 3 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆19Updated 3 years ago
- A package to annotate protein sequences☆56Updated last month
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15Updated 5 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- gutSMASH☆53Updated 3 months ago
- This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the …☆14Updated last year
- A collection of tools to download and process KEGG database☆34Updated 6 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆49Updated 4 months ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆54Updated this week
- A program for divvying or partially filtering multiple sequence alignments☆24Updated 5 years ago
- PaperBLAST: find papers about a protein or its homologs☆39Updated 2 months ago