SBRG / iModulonMinerLinks
Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
☆22Updated 11 months ago
Alternatives and similar repositories for iModulonMiner
Users that are interested in iModulonMiner are comparing it to the libraries listed below
Sorting:
- RNA secondary structure/sequence profiles for homology search and alignment☆114Updated 11 months ago
- Fast and flexible ORF finder☆76Updated 3 years ago
- Logan Unitigs and Contigs☆171Updated 3 weeks ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 4 months ago
- Associated code for EvoWeaver publication☆15Updated 4 months ago
- On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs☆21Updated 3 months ago
- ☆26Updated last year
- UniProt Id Mapping through API☆35Updated 2 weeks ago
- Multi-class signal peptide prediction and structure decoding model.☆95Updated 8 months ago
- Machine-learning-based general bacterial promoter prediction tool.☆51Updated 2 years ago
- sensitive and precise assembly of short sequencing reads☆161Updated 11 months ago
- MGnify genome analysis pipeline☆106Updated 2 months ago
- Webserver and command line tool for annotating engineered plasmids☆131Updated 2 months ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆113Updated 3 weeks ago
- iCodon customizes gene expression based on the codon composition☆15Updated last year
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆154Updated 10 months ago
- BGC Detection and Classification Using Deep Learning☆154Updated last year
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆149Updated 3 weeks ago
- ☆11Updated 2 years ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆101Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆78Updated 2 weeks ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆86Updated last month
- Discovery of conserved gene clusters in multiple genomes☆97Updated 4 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆42Updated 3 weeks ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆16Updated 5 years ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆94Updated 3 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- Protein structure alignment and search algorithm☆73Updated this week
- ☆131Updated last year
- A high-performance modification detection tool in Rust☆59Updated last week