Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
☆32Nov 7, 2024Updated last year
Alternatives and similar repositories for iModulonMiner
Users that are interested in iModulonMiner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆19Feb 29, 2024Updated 2 years ago
- Python package for analyzing and visualizing iModulons☆15Jul 13, 2026Updated last week
- Deep learning based prediction of temperature dependent enzyme turnover rates☆18Nov 24, 2024Updated last year
- ☆11Oct 21, 2023Updated 2 years ago
- Symbolic Kinetic Models with Python☆37Jun 4, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- Deep conditional autoregressive models for genome editing sequence-to-sequence problems☆10Jun 29, 2021Updated 5 years ago
- GPro: a toolbox for Generative approaches in promoter design☆29Mar 8, 2024Updated 2 years ago
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 4 years ago
- CGView.js creates interactive circular and linear genome maps.☆47Jul 9, 2026Updated 2 weeks ago
- Whole cell model of E. coli implemented with Vivarium☆30Updated this week
- PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion☆13Jul 4, 2024Updated 2 years ago
- 代谢网络模型构建和使用实操☆33Mar 18, 2023Updated 3 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆53Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Software for predicting translation initiation rates in bacteria☆34Jul 30, 2025Updated 11 months ago
- Phylotype your strains using Clermont's 2013 method: ezclermont.org☆16May 5, 2026Updated 2 months ago
- MOVIS: A Multi-Omics Software Solution for Multi-modal Time-Series Clustering, Embedding, and Visualizing Tasks, by Aleksandar Anžel, Dom…☆10May 17, 2022Updated 4 years ago
- Machine Learning models for in vitro enzyme kinetic parameter prediction☆94Jun 15, 2026Updated last month
- Models, design algorithms, and other software related to Salis lab publications☆38Nov 6, 2024Updated last year
- Learning Neural Differential Algebraic Equations via Operator Splitting☆20Jul 24, 2025Updated last year
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆17May 16, 2023Updated 3 years ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆44Apr 27, 2026Updated 2 months ago
- ☆25Sep 21, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Oct 21, 2022Updated 3 years ago
- ☆43Jul 8, 2025Updated last year
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆16Dec 18, 2025Updated 7 months ago
- ☆30Jul 6, 2026Updated 2 weeks ago
- Framework for multi-omics data integration by autoencoders☆32Jan 20, 2026Updated 6 months ago
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Jul 25, 2016Updated 9 years ago
- Genome scale metabolic models in SBML format☆11Nov 16, 2021Updated 4 years ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Jul 15, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A simulation engine for compartmental models☆15Jun 4, 2026Updated last month
- Martini Workshop: Simulating a Minimal Bacterial Cell☆16May 13, 2024Updated 2 years ago
- For computational analysis of bacterial RNA-seq data☆12Jul 14, 2017Updated 9 years ago
- Project Manager for NGS data analysis☆31Jul 10, 2026Updated 2 weeks ago
- A Python package for "classic" Constraint-Based Reconstruction and Analysis (COBRA) and the new COBRA with kinetics (COBRA-k). Link to do…☆19Jul 16, 2026Updated last week
- Chat offline with open-source LLMs like deepseek-r1, nemotron, qwen, llama and more all through a simple R package powered by Shiny and O…☆22Mar 12, 2025Updated last year
- A collection of tools to work with Illumina's basespace☆13Apr 10, 2019Updated 7 years ago