peng-lab / leonardo_toolsetLinks
☆16Updated this week
Alternatives and similar repositories for leonardo_toolset
Users that are interested in leonardo_toolset are comparing it to the libraries listed below
Sorting:
- ☆20Updated 3 weeks ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆55Updated 2 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Updated 3 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated this week
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Updated 2 months ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 9 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- 3D shape analysis using deep learning☆29Updated 4 months ago
- ☆38Updated 2 months ago
- dask empowered fast4dreg☆15Updated last year
- ☆21Updated last year
- Napari plugin for vollseg☆14Updated 6 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Updated 2 months ago
- Tools for distributed alignment of massive images☆92Updated last week
- Light microscopy simulation in python.☆43Updated last week
- ☆15Updated 2 weeks ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆84Updated 2 months ago
- Accurate and efficient spot detection for microscopy data☆117Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆112Updated last month
- ☆12Updated last year
- ☆51Updated 9 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- A template repo used to make new napari plugins☆31Updated last week
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆20Updated 4 years ago
- Transformer-based cell tracking for live-cell microscopy☆123Updated last week
- ☆13Updated 10 months ago