peng-lab / leonardo_toolsetLinks
☆14Updated last week
Alternatives and similar repositories for leonardo_toolset
Users that are interested in leonardo_toolset are comparing it to the libraries listed below
Sorting:
- ☆20Updated last month
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated this week
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- Accurate and efficient spot detection for microscopy data☆100Updated this week
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- Transformer-based cell tracking for live-cell microscopy☆91Updated this week
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 11 months ago
- 3D shape analysis using deep learning☆27Updated last year
- ☆20Updated last year
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- ☆37Updated 3 weeks ago
- Napari plugin for vollseg☆15Updated 2 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- ☆40Updated 2 weeks ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆16Updated 4 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 9 months ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 4 months ago
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆22Updated 3 weeks ago
- Tools for distributed alignment of massive images☆86Updated this week
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 9 months ago
- ☆15Updated last month
- ☆51Updated 4 months ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆19Updated 2 years ago
- Automated mitochondrial segmentation and tracking.☆32Updated 4 years ago
- ☆12Updated last year
- dask empowered fast4dreg☆12Updated 9 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆38Updated 3 months ago