LabTrivedi / MOrgAnaLinks
☆30Updated 8 months ago
Alternatives and similar repositories for MOrgAna
Users that are interested in MOrgAna are comparing it to the libraries listed below
Sorting:
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆148Updated last week
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 10 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆80Updated 6 months ago
- ☆85Updated 6 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆68Updated last year
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆22Updated last month
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- Piecewise alignment for layers of mosaics☆29Updated last month
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 2 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 months ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated last month
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆180Updated last week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆81Updated 3 weeks ago
- QuPath extension for Cellsparse☆19Updated 5 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆62Updated 6 months ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- ImageJ macros and scripts written at the imaging facility MRI☆35Updated last week
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- StarDist plugin for napari☆39Updated last year
- Lectures for a napari training course☆50Updated 2 years ago
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆150Updated last month
- Raw format to OME-TIFF converter☆56Updated 3 weeks ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆38Updated 4 months ago
- ☆34Updated last year
- Deconvolution of widefield microscopy images and generation of point spread functions☆52Updated last week