LabTrivedi / MOrgAnaLinks
☆32Updated 11 months ago
Alternatives and similar repositories for MOrgAna
Users that are interested in MOrgAna are comparing it to the libraries listed below
Sorting:
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆151Updated 3 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆85Updated this week
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆51Updated last month
- A napari plugin for clustering objects according to their properties.☆88Updated 2 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 5 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆83Updated last month
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated 3 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last month
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆136Updated 5 years ago
- ☆91Updated 2 months ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆123Updated this week
- Deconvolution of widefield microscopy images and generation of point spread functions☆58Updated last month
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- Lectures for a napari training course☆50Updated 2 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated 3 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 8 months ago
- QuPath extension for Cellsparse☆19Updated 8 months ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 4 months ago
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Updated 2 years ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆189Updated this week
- ☆36Updated last year
- A template repo used to make new napari plugins☆30Updated last week
- CellProfiler tutorial pipelines and images☆98Updated 2 months ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- StarDist plugin for napari☆38Updated last year
- Multiple file format reading directly into napari using pure Python☆39Updated 2 months ago