Alternatives and similar repositories for ionmob

Users that are interested in ionmob are comparing it to the libraries listed below

• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆54Updated 2 months ago
• mgleeming / synthedia
  Create synthetic DIA LC-MS/MS for proteomics experiments
  ☆15Updated 2 years ago
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆44Updated 3 months ago
• wilhelm-lab / PROSPECT
  Proteomics Mass Spectrometry Datasets for Machine Learning
  ☆17Updated 10 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆44Updated 3 months ago
• mafreitas / tdf2mzml
  ☆26Updated last year
• wilhelm-lab / spectrum_fundamentals
  Fundamentals public repo
  ☆10Updated 2 weeks ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆25Updated 2 months ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆43Updated this week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆37Updated last week
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆65Updated 2 weeks ago
• MatteoLacki / timspy
  ☆20Updated 3 years ago
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆87Updated 3 months ago
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆127Updated 3 weeks ago
• gtluu / timsconvert
  ☆37Updated 3 months ago
• LeidelLab / SMITER
  Synthetic mzML writer
  ☆13Updated 3 months ago
• MannLabs / alphaviz
  AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…
  ☆32Updated 2 months ago
• OpenMS / pyopenms_viz
  Streamlining Mass Spectrometry Data Visualization with Pandas
  ☆17Updated last month
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆27Updated 2 weeks ago
• hcji / DeepMASS
  A known-to-unknown metabolite identification workflow
  ☆20Updated 4 years ago
• merlin-ms / awesome-mass-spectral-libraries
  ☆19Updated last year
• wfondrie / depthcharge
  A deep learning toolkit for mass spectrometry
  ☆79Updated 11 months ago
• bihealth / NeatMS
  NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.
  ☆32Updated 3 years ago
• pnnl / deimos
  ☆34Updated 3 weeks ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆46Updated this week
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆48Updated last week
• bittremieux-lab / falcon
  Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.
  ☆29Updated last month
• michaelmarty / MassSpecCodingClub
  A community dedicated to education of computer coding applied to mass spectrometry applications.
  ☆52Updated last year
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆82Updated 3 months ago
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆58Updated 2 months ago