Alternatives and similar repositories for ionmob

Users that are interested in ionmob are comparing it to the libraries listed below

• CompOmics / IM2Deep
  Collisional cross-section prediction for modified and multiconformational peptides
  ☆12Updated this week
• semiller10 / postnovo
  Post-processing peptide de novo sequences to improve their accuracy
  ☆10Updated 2 years ago
• bittremieux-lab / denovo_benchmarks
  ☆14Updated last month
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆69Updated 3 weeks ago
• wilhelm-lab / PROSPECT
  Proteomics Mass Spectrometry Datasets for Machine Learning
  ☆19Updated 11 months ago
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆44Updated 5 months ago
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆28Updated this week
• lkytal / PredFull
  This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network
  ☆31Updated 2 years ago
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆49Updated last month
• MatteoLacki / timspy
  ☆20Updated 4 years ago
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆129Updated last month
• OpenMS / pyopenms_viz
  Streamlining Mass Spectrometry Data Visualization with Pandas
  ☆19Updated this week
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆54Updated 4 months ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆46Updated 2 weeks ago
• wilhelm-lab / spectrum_fundamentals
  Fundamentals public repo
  ☆11Updated last month
• HUPO-PSI / mzSpecLib
  mzSpecLib: A standard format to exchange/distribute spectral libraries
  ☆27Updated this week
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆47Updated 5 months ago
• jessegmeyerlab / PeCorA
  Peptide Correlation analysis
  ☆10Updated 10 months ago
• usnistgov / UniSpec
  Implementation of UniSpec, a deep learning model for predicting full fragment ion peptide spectra.
  ☆12Updated 6 months ago
• iomega / spec2vec
  Word2Vec based similarity measure of mass spectrometry data.
  ☆72Updated 11 months ago
• pyQms / pyqms
  pyQms, generalized, fast and accurate mass spectrometry data quantification
  ☆28Updated last year
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆88Updated last month
• jingbo02 / Awesome-Denovo-Peptide-Sequencing
  Paper collection about de novo peptide Sequening
  ☆18Updated 6 months ago
• iomega / ms2query
  MS2Query - machine learning assisted library querying of MS/MS spectra
  ☆45Updated 2 months ago
• pFindStudio / pGlyco3
  ☆20Updated 5 months ago
• bittremieux-lab / spectrum_utils
  Python package for efficient mass spectrometry data processing and visualization
  ☆154Updated 4 months ago
• MannLabs / alphadia
  modular & open DIA search
  ☆73Updated this week
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆41Updated last year
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆70Updated last week
• MatteoLacki / IsoSpec
  Libraries for fine isotopic structure calculator.
  ☆40Updated last month